View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_low_77 (Length: 244)

Name: NF6698_low_77
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_low_77
NF6698_low_77
[»] chr2 (45 HSPs)
chr2 (1-142)||(2410062-2410203)
chr2 (149-228)||(2410333-2410412)
chr2 (1-93)||(11513859-11513951)
chr2 (2-91)||(9395093-9395182)
chr2 (2-92)||(33942112-33942202)
chr2 (15-102)||(10143124-10143211)
chr2 (7-93)||(15780040-15780124)
chr2 (2-93)||(22681203-22681294)
chr2 (28-90)||(5043604-5043666)
chr2 (2-92)||(13630299-13630389)
chr2 (9-91)||(25790089-25790171)
chr2 (2-91)||(27288596-27288683)
chr2 (15-93)||(28803537-28803615)
chr2 (19-92)||(3102655-3102728)
chr2 (2-83)||(3235402-3235482)
chr2 (2-102)||(18962055-18962156)
chr2 (1-34)||(40837452-40837485)
chr2 (2-78)||(10285836-10285912)
chr2 (2-78)||(40158694-40158770)
chr2 (2-82)||(43205281-43205361)
chr2 (3-102)||(5133724-5133823)
chr2 (2-89)||(29316793-29316880)
chr2 (43-98)||(37766754-37766809)
chr2 (4-102)||(1742052-1742150)
chr2 (43-93)||(14666509-14666559)
chr2 (1-91)||(18066091-18066181)
chr2 (44-90)||(31740019-31740065)
chr2 (2-92)||(32694174-32694264)
chr2 (37-102)||(43299455-43299521)
chr2 (43-93)||(43529910-43529960)
chr2 (2-92)||(44438857-44438947)
chr2 (10-71)||(757438-757499)
chr2 (38-91)||(4550740-4550793)
chr2 (37-102)||(17952754-17952819)
chr2 (51-96)||(29429824-29429869)
chr2 (3-89)||(29503100-29503188)
chr2 (2-90)||(35485881-35485969)
chr2 (2-51)||(43065468-43065517)
chr2 (10-91)||(43141834-43141915)
chr2 (1-54)||(43985020-43985073)
chr2 (7-60)||(44238057-44238110)
chr2 (2-102)||(6227703-6227803)
chr2 (49-93)||(33256701-33256745)
chr2 (22-78)||(37276722-37276778)
chr2 (1-65)||(39983331-39983395)
[»] chr4 (31 HSPs)
chr4 (3-104)||(53943557-53943657)
chr4 (28-93)||(927437-927502)
chr4 (2-89)||(7694028-7694115)
chr4 (2-102)||(24929445-24929545)
chr4 (2-102)||(49219091-49219191)
chr4 (2-102)||(54325055-54325155)
chr4 (37-104)||(55870394-55870461)
chr4 (2-83)||(18628561-18628642)
chr4 (2-83)||(51197500-51197580)
chr4 (2-93)||(30207589-30207679)
chr4 (2-80)||(21157742-21157820)
chr4 (2-83)||(20936247-20936328)
chr4 (2-67)||(35405934-35405999)
chr4 (37-89)||(13949897-13949949)
chr4 (5-91)||(8422860-8422944)
chr4 (2-93)||(11802495-11802586)
chr4 (1-72)||(36722686-36722757)
chr4 (44-102)||(4071834-4071892)
chr4 (17-102)||(27623587-27623675)
chr4 (9-91)||(30581702-30581784)
chr4 (2-92)||(35064817-35064907)
chr4 (7-93)||(52735083-52735169)
chr4 (2-83)||(29263341-29263422)
chr4 (2-91)||(33534187-33534276)
chr4 (37-102)||(49085941-49086006)
chr4 (1-101)||(6466063-6466163)
chr4 (2-102)||(10192236-10192335)
chr4 (43-91)||(25434519-25434567)
chr4 (7-75)||(42866047-42866115)
chr4 (2-102)||(45128328-45128428)
chr4 (2-102)||(51630063-51630163)
[»] chr6 (20 HSPs)
chr6 (2-102)||(2117355-2117455)
chr6 (2-91)||(32386581-32386670)
chr6 (2-70)||(1275133-1275201)
chr6 (5-97)||(1401067-1401158)
chr6 (2-102)||(2027424-2027524)
chr6 (2-102)||(33787763-33787863)
chr6 (2-93)||(281866-281957)
chr6 (2-93)||(3155137-3155227)
chr6 (1-83)||(8420214-8420296)
chr6 (6-102)||(24836224-24836317)
chr6 (1-102)||(4006666-4006767)
chr6 (2-41)||(1408285-1408324)
chr6 (3-102)||(5328926-5329024)
chr6 (43-102)||(6310283-6310342)
chr6 (1-92)||(25100005-25100096)
chr6 (2-97)||(28088240-28088335)
chr6 (2-92)||(1497943-1498033)
chr6 (2-92)||(20671884-20671973)
chr6 (8-93)||(3181093-3181177)
chr6 (37-102)||(10452413-10452478)
[»] chr3 (42 HSPs)
chr3 (2-93)||(27792833-27792924)
chr3 (2-102)||(24887301-24887401)
chr3 (2-102)||(20192624-20192724)
chr3 (2-65)||(14548739-14548802)
chr3 (2-89)||(23785220-23785307)
chr3 (2-91)||(45432957-45433046)
chr3 (2-89)||(36101533-36101620)
chr3 (7-62)||(51510216-51510271)
chr3 (2-91)||(20502086-20502176)
chr3 (2-91)||(1816546-1816635)
chr3 (2-83)||(21367638-21367719)
chr3 (9-102)||(22232778-22232871)
chr3 (4-89)||(23315591-23315676)
chr3 (43-88)||(28779322-28779367)
chr3 (5-82)||(48286831-48286908)
chr3 (2-54)||(237397-237449)
chr3 (3-90)||(1125785-1125873)
chr3 (2-89)||(2318609-2318697)
chr3 (1-93)||(33965505-33965600)
chr3 (2-89)||(36139843-36139930)
chr3 (2-62)||(43115048-43115108)
chr3 (18-78)||(43875624-43875684)
chr3 (1-93)||(44374662-44374753)
chr3 (5-65)||(47904084-47904144)
chr3 (2-89)||(27290919-27291006)
chr3 (2-61)||(44295522-44295581)
chr3 (3-102)||(54775080-54775178)
chr3 (2-88)||(25453877-25453963)
chr3 (43-93)||(40122812-40122861)
chr3 (52-102)||(49586984-49587034)
chr3 (7-96)||(8933745-8933834)
chr3 (2-90)||(2201092-2201180)
chr3 (43-91)||(12923384-12923432)
chr3 (1-93)||(13481256-13481348)
chr3 (2-78)||(16990179-16990255)
chr3 (43-83)||(19679387-19679427)
chr3 (2-93)||(21862193-21862285)
chr3 (38-102)||(22214735-22214799)
chr3 (3-83)||(26603164-26603244)
chr3 (45-93)||(31337462-31337510)
chr3 (2-102)||(36646400-36646500)
chr3 (37-93)||(37788821-37788877)
[»] chr1 (50 HSPs)
chr1 (2-97)||(45205025-45205120)
chr1 (2-92)||(37842373-37842463)
chr1 (2-91)||(30257646-30257735)
chr1 (2-102)||(30259504-30259605)
chr1 (2-81)||(8130409-8130488)
chr1 (2-93)||(34380406-34380497)
chr1 (3-77)||(4078168-4078242)
chr1 (31-93)||(33527194-33527256)
chr1 (2-83)||(7218092-7218173)
chr1 (45-102)||(15360846-15360903)
chr1 (1-82)||(15515513-15515594)
chr1 (1-102)||(42556648-42556749)
chr1 (2-74)||(12564892-12564964)
chr1 (2-90)||(25479545-25479633)
chr1 (2-98)||(30371104-30371200)
chr1 (1-93)||(44032016-44032108)
chr1 (2-93)||(31517758-31517849)
chr1 (2-93)||(39347985-39348076)
chr1 (2-92)||(44940305-44940393)
chr1 (7-93)||(27738203-27738289)
chr1 (3-104)||(6932980-6933081)
chr1 (2-102)||(3924576-3924676)
chr1 (2-102)||(39777615-39777715)
chr1 (8-92)||(46980153-46980237)
chr1 (2-54)||(49175619-49175671)
chr1 (43-102)||(5756745-5756804)
chr1 (43-102)||(6074426-6074485)
chr1 (2-61)||(7472304-7472363)
chr1 (37-96)||(10581130-10581189)
chr1 (2-81)||(33723400-33723479)
chr1 (1-89)||(35017539-35017629)
chr1 (2-61)||(35590910-35590969)
chr1 (2-92)||(4215334-4215424)
chr1 (2-83)||(6231834-6231916)
chr1 (9-83)||(17269221-17269295)
chr1 (37-83)||(25006087-25006133)
chr1 (2-91)||(3319950-3320039)
chr1 (2-83)||(5150908-5150989)
chr1 (43-96)||(5421979-5422032)
chr1 (37-102)||(7273992-7274057)
chr1 (2-91)||(12477305-12477394)
chr1 (2-83)||(27887136-27887217)
chr1 (31-92)||(37272633-37272694)
chr1 (37-102)||(49517022-49517087)
chr1 (2-102)||(4200181-4200281)
chr1 (2-34)||(5047166-5047198)
chr1 (1-61)||(7137015-7137075)
chr1 (2-102)||(12564517-12564616)
chr1 (37-93)||(28467360-28467416)
chr1 (1-93)||(52286639-52286731)
[»] chr7 (26 HSPs)
chr7 (2-93)||(44151498-44151589)
chr7 (37-102)||(1417216-1417281)
chr7 (2-91)||(31338471-31338560)
chr7 (43-100)||(45777230-45777287)
chr7 (37-93)||(9527143-9527199)
chr7 (10-93)||(17989049-17989132)
chr7 (10-89)||(29363483-29363562)
chr7 (10-93)||(30456476-30456559)
chr7 (2-93)||(38010675-38010766)
chr7 (1-92)||(39505919-39506009)
chr7 (2-104)||(21185039-21185140)
chr7 (2-92)||(44910566-44910656)
chr7 (38-83)||(18516303-18516348)
chr7 (43-92)||(45813239-45813288)
chr7 (37-93)||(5006562-5006618)
chr7 (10-78)||(27481320-27481388)
chr7 (10-78)||(36370645-36370713)
chr7 (11-102)||(1373567-1373658)
chr7 (2-93)||(3610758-3610849)
chr7 (2-93)||(28165052-28165143)
chr7 (2-80)||(24909638-24909716)
chr7 (2-80)||(34754828-34754905)
chr7 (2-79)||(3559010-3559087)
chr7 (11-79)||(1350269-1350337)
chr7 (2-54)||(24363619-24363671)
chr7 (1-61)||(44241852-44241912)
[»] chr8 (27 HSPs)
chr8 (2-83)||(26284813-26284894)
chr8 (1-93)||(30013179-30013271)
chr8 (2-97)||(11795049-11795144)
chr8 (2-103)||(41336663-41336764)
chr8 (1-89)||(6509320-6509408)
chr8 (2-77)||(7645955-7646030)
chr8 (2-93)||(31862454-31862545)
chr8 (2-55)||(7918791-7918844)
chr8 (6-83)||(10383856-10383933)
chr8 (2-83)||(29973052-29973133)
chr8 (8-101)||(34551073-34551166)
chr8 (5-82)||(37776725-37776802)
chr8 (2-83)||(39561559-39561640)
chr8 (2-90)||(12361156-12361244)
chr8 (37-93)||(34770853-34770909)
chr8 (2-79)||(43704394-43704473)
chr8 (11-78)||(10460579-10460646)
chr8 (2-93)||(11183506-11183597)
chr8 (2-93)||(41620309-41620400)
chr8 (2-88)||(42215324-42215410)
chr8 (2-83)||(6864477-6864558)
chr8 (2-83)||(28769357-28769438)
chr8 (1-93)||(35298494-35298587)
chr8 (37-102)||(38561678-38561743)
chr8 (2-54)||(9956832-9956884)
chr8 (50-102)||(34788493-34788545)
chr8 (2-34)||(39881770-39881802)
[»] chr5 (32 HSPs)
chr5 (2-91)||(37588378-37588467)
chr5 (1-102)||(42181109-42181210)
chr5 (2-102)||(14295458-14295558)
chr5 (10-65)||(29054897-29054952)
chr5 (2-92)||(36539708-36539798)
chr5 (2-91)||(37690654-37690744)
chr5 (2-83)||(17368647-17368728)
chr5 (2-91)||(37526217-37526306)
chr5 (1-93)||(32172614-32172706)
chr5 (3-83)||(41016150-41016230)
chr5 (2-109)||(28586784-28586891)
chr5 (2-92)||(26390808-26390897)
chr5 (2-79)||(9106796-9106873)
chr5 (2-91)||(10272449-10272538)
chr5 (2-83)||(17258901-17258982)
chr5 (2-102)||(18543215-18543315)
chr5 (37-102)||(39823174-39823239)
chr5 (2-102)||(18704054-18704153)
chr5 (2-89)||(19177444-19177532)
chr5 (37-89)||(32059642-32059694)
chr5 (2-73)||(11104899-11104970)
chr5 (10-93)||(15003540-15003623)
chr5 (47-102)||(35135725-35135780)
chr5 (47-89)||(583836-583878)
chr5 (2-81)||(19138735-19138816)
chr5 (1-83)||(31030147-31030229)
chr5 (2-55)||(15074767-15074820)
chr5 (3-83)||(41017698-41017776)
chr5 (37-90)||(41277403-41277456)
chr5 (1-61)||(2568651-2568711)
chr5 (2-82)||(8985633-8985713)
chr5 (2-102)||(42583101-42583201)
[»] scaffold0024 (1 HSPs)
scaffold0024 (2-102)||(27528-27628)
[»] scaffold0053 (1 HSPs)
scaffold0053 (23-90)||(20143-20210)
[»] scaffold0020 (1 HSPs)
scaffold0020 (2-92)||(159991-160080)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 2410062 - 2410203
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataa 100  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  2410062 attttcagcttatttccataagctctacaggataaaatatgcaaacaacttatagattatatgaagacaatttgactttgtttcatcttttgtcatataa 2410161  T
Q  101 atggtgtatggcttatagacttatacttaagcacttatatga 142  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  2410162 atggcgtatggcttatagacttatgcttaagcacttatatga 2410203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 2410333 - 2410412
Alignment:
Q  149 agtgttaatagttggttacctcgcttctatttcccttcaattcaatgcttttctaagccgaacattggggcttctagctg 228  Q
    ||||||||||||||| |||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  2410333 agtgttaatagttggctacctcgcttctctttctcttcgattcaatgcttttctaagccgaacattggggcttctagctg 2410412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 11513951 - 11513859
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||||||||||||||| ||| ||| |||||||  ||||| ||||||||||||| ||||||||| ||| ||||||||||||| |||||||||    
T  11513951 attttcagcttatttccaaaagttctccatgatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgt 11513859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 9395182 - 9395093
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    |||||||||||||| |||||||||||||  |||| | ||| ||||| ||||||||||||||||| ||| |||  |||||||| |||||||    
T  9395182 ttttcagcttattttcataagctctacagaataactaatgaaaacagcttatagattatatgaaaacaatttagctttattttatctttt 9395093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 33942202 - 33942112
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    ||||||||| |||| ||| ||||||  |||||   ||||| ||||||||||||| ||| ||||| ||||||||||||||||| ||||||||    
T  33942202 ttttcagctaattttcattagctctctatgatggcttatgaaaacaacttatagcttacatgaaaacagtttgactttattttatcttttg 33942112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 10143211 - 10143124
Alignment:
Q  15 tccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||||| |||| |||||||  ||||| ||| ||||||||| |||||| || |||||||||||| |||| ||||||||| ||| ||||    
T  10143211 tccataaactctccatgatagcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaat 10143124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 15780124 - 15780040
Alignment:
Q  7 agcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||||||| ||||||||| || ||||  ||||| ||||||||||||||||||||||| || ||||   ||||||| |||||||||    
T  15780124 agcttatttctataagctctgcacgatagcttatgaaaacaacttatagattatatgaaaaccgttt--atttattttatcttttgt 15780040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 22681203 - 22681294
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||| |||||||||||||||| |||  | |||| |||||| ||||| ||||||| ||||||||| ||| |||| |||| ||| |||||||||    
T  22681203 tttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttggctttgttttatcttttgt 22681294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 5043604 - 5043666
Alignment:
Q  28 catgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttt 90  Q
    |||||||  ||||| ||||||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  5043604 catgatagcttatgaaaacaacttctagcttatatgaaaacagtttgactttattttatcttt 5043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 13630299 - 13630389
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    |||||| ||||||  ||||| ||||  | |||| |||| | ||||||||||| ||||||||||| ||||||||||||||| | ||||||||    
T  13630299 ttttcaacttattgtcataaactctcaaggatagattaggaaaacaacttattgattatatgaaaacagtttgactttatcttatcttttg 13630389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 25790171 - 25790089
Alignment:
Q  9 cttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    ||||||| |||||||||| || |||| ||||| ||||||| || ||| ||||||||| |||||||||||| | || |||||||    
T  25790171 cttattttcataagctctccaggatagattatccaaacaatttgtagcttatatgaaaacagtttgacttcactttatctttt 25790089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 27288683 - 27288596
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    |||||||||||||||| ||| ||||||||||||| ||||| |||||  | |||| ||||||  | ||||||||| ||||||| |||||||    
T  27288683 ttttcagcttatttccgtaaactctacatgataacttatgaaaacagatcatagcttatat--aaacagtttgattttattttatctttt 27288596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 28803537 - 28803615
Alignment:
Q  15 tccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||||||||| || ||||  ||| | ||||||||| ||| |||||||||  |||||||||||||||| |||||||||    
T  28803537 tccataagctctccaggatagtttaagaaaacaacttgtagcttatatgaaatcagtttgactttattttatcttttgt 28803615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 3102728 - 3102655
Alignment:
Q  19 taagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    |||| ||| |||||||||||||| ||||| || ||||||||||| || | ||||||||||||||| || |||||    
T  3102728 taagttctccatgataaattatgaaaacagctaatagattatataaaaatagtttgactttattttatattttg 3102655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 3235402 - 3235482
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||||||||||||||||||| || | || ||||   |||| ||||| ||||||| ||||||||| |||||||||||||||||    
T  3235402 ttttcagcttatttccataaacttttcaagatagtatatgaaaacagcttatagtttatatgaa-acagtttgactttattt 3235482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 18962055 - 18962156
Alignment:
Q  2 ttttcagctt-atttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataa 100  Q
    |||||||||| |||||||||  |||| |||||||  ||||| ||| |  |||||| ||||||||| ||||||| ||||||||| ||||||||| ||| ||    
T  18962055 ttttcagctttatttccatagtctctccatgatagcttatgaaaatagtttatagcttatatgaaaacagtttaactttattttatcttttgttataaaa 18962154  T
Q  101 at 102  Q
    ||    
T  18962155 at 18962156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 40837452 - 40837485
Alignment:
Q  1 attttcagcttatttccataagctctacatgata 34  Q
    ||||||||||||||||||||||||||||||||||    
T  40837452 attttcagcttatttccataagctctacatgata 40837485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 10285912 - 10285836
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactt 78  Q
    |||||| |||||||||||||| |||  ||| ||  |||||||||| |||||||| |||||||||  |||||||||||    
T  10285912 ttttcaacttatttccataagttctctatgttagcttatgcaaacgacttatagcttatatgaaaccagtttgactt 10285836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 40158770 - 40158694
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactt 78  Q
    ||||||||||| || |||||||||| ||  |||| ||||| ||||||||||| | ||||| ||| ||||||||||||    
T  40158770 ttttcagcttaattacataagctctccagaataacttatgaaaacaacttattgcttatacgaaaacagtttgactt 40158694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 43205361 - 43205281
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatt 82  Q
    |||||| |||||||||||||||||| | |||||  ||||| |||||  |||||  ||||||||| |||||||| |||||||    
T  43205361 ttttcaacttatttccataagctctccgtgatagcttatgaaaacagattatatcttatatgaaaacagtttggctttatt 43205281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 5133823 - 5133724
Alignment:
Q  3 tttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||||||||||||||||||||||    ||||| || || ||||| ||||||  |||||| || |||||||  |||||||| ||||||||| ||| ||||    
T  5133823 tttcagcttatttccataagctctcttagataacttttgaaaacagcttatatcttatataaaaacagtttatctttattttatcttttgttatagaaat 5133724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 29316793 - 29316880
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    ||||||||||||||||||||| ||| || ||||  | ||| ||||| |||||||||||| |||| ||| ||| || |||||| |||||    
T  29316793 ttttcagcttatttccataagttctccaagatagctgatgaaaacagcttatagattatgtgaaaacaatttaaccttattttatctt 29316880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 37766809 - 37766754
Alignment:
Q  43 aaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatat 98  Q
    ||||||||||||| ||||| ||| ||| ||||||||||||| || |||||||||||    
T  37766809 aaacaacttatagtttatacgaaaacattttgactttattttattttttgtcatat 37766754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 1742052 - 1742150
Alignment:
Q  4 ttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    |||| ||||||||||||| |||| ||||||| |||||| ||||| ||||||  ||||||  | | |||||||||| |||| || |||||| ||| ||||    
T  1742052 ttcaacttatttccataaactcttcatgatagattatgaaaacagcttatatcttatatataaagagtttgacttcattttatattttgttatagaaat 1742150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 14666559 - 14666509
Alignment:
Q  43 aaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||||||  |||||||||  |||||||||||||||| |||||||||    
T  14666559 aaacaacttataacttatatgaaatcagtttgactttattttatcttttgt 14666509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 18066181 - 18066091
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    ||||||| ||||||| | |||| ||| || ||||  ||||| ||||| ||||||| ||||||||| ||| ||| |||||||||||| ||||    
T  18066181 attttcaccttattttcttaagttctccaagatagcttatgaaaacagcttatagcttatatgaaaacaatttaactttatttcatatttt 18066091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 31740019 - 31740065
Alignment:
Q  44 aacaacttatagattatatgaacacagtttgactttatttcatcttt 90  Q
    |||||||||||| ||||||||| | ||||||||||||||| ||||||    
T  31740019 aacaacttatagcttatatgaaaatagtttgactttattttatcttt 31740065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 32694264 - 32694174
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    ||||||||||||||||| || || |  | ||||  |||||||||||||||||| ||||||| || | ||| ||| ||||||| ||||||||    
T  32694264 ttttcagcttatttccacaatctatctaggatagcttatgcaaacaacttataaattatataaaaatagtctgattttattttatcttttg 32694174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 43299455 - 43299521
Alignment:
Q  37 ttatgcaaacaacttatagatt-atatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||| |||||||||||||||| |||  || ||||||||||||||||| ||||| ||| ||||||||    
T  43299455 ttatgaaaacaacttatagatttatacaaaaacagtttgactttattttatcttctgttatataaat 43299521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 43529910 - 43529960
Alignment:
Q  43 aaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||||||||||||| |||  |||||||| ||||||| |||||||||    
T  43529910 aaacaacttatagattataggaaagcagtttgattttattttatcttttgt 43529960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 44438857 - 44438947
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    ||||||||||||||||| ||| ||| || ||||| ||||| | ||| ||||| | || ||  || ||||||||||||||||| ||||||||    
T  44438857 ttttcagcttatttccacaagatctccaggataacttatgaagacagcttatggcttgtacaaaaacagtttgactttattttatcttttg 44438947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 757499 - 757438
Alignment:
Q  10 ttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagt 71  Q
    ||||||||||||||||| || ||||| || || ||||| ||||||| |||||| ||||||||    
T  757499 ttatttccataagctctccaggataatttttgaaaacatcttatagcttatataaacacagt 757438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 4550793 - 4550740
Alignment:
Q  38 tatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    |||| ||||||||||||| ||||||||| |||| ||||| |||||| |||||||    
T  4550793 tatgaaaacaacttatagtttatatgaaaacagcttgacgttattttatctttt 4550740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 17952754 - 17952819
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||| ||||| ||| ||| ||||||||| | ||||||||||||||| ||||||||| ||| ||||    
T  17952754 ttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttatagaaat 17952819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 29429824 - 29429869
Alignment:
Q  51 tatagattatatgaacacagtttgactttatttcatcttttgtcat 96  Q
    ||||| |||| |||| ||||||||||||||||| ||||||||||||    
T  29429824 tatagcttatgtgaaaacagtttgactttattttatcttttgtcat 29429869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 29503100 - 29503188
Alignment:
Q  3 tttcagcttatttccataagctctacatgataaa--ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    |||||||||||||||||||||||| || |||| |  ||||| ||||| ||||||  || | |||| | ||||||||||||||| |||||    
T  29503100 tttcagcttatttccataagctctccaagatatagtttatggaaacatcttataacttctttgaaaatagtttgactttattttatctt 29503188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 35485969 - 35485881
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattat-atgaacacagtttgactttatttcatcttt 90  Q
    ||||||||| ||||||||| ||||| || ||||  ||||  ||||||||||||| |||| ||||| | ||||||||||||||| ||||||    
T  35485969 ttttcagctcatttccataggctcttcaggatagcttataaaaacaacttatagcttataatgaa-atagtttgactttattttatcttt 35485881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 43065468 - 43065517
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaactt 51  Q
    ||||||||||||||| ||||||||| || ||||| ||||| |||||||||    
T  43065468 ttttcagcttatttcaataagctctccacgataacttatgaaaacaactt 43065517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 43141915 - 43141834
Alignment:
Q  10 ttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    |||||||||||| |||| || ||||  ||||| ||||| ||||||| ||||||| | ||| |||||||||| || |||||||    
T  43141915 ttatttccataaactcttcaggatagcttatgaaaacatcttatagcttatatggaaacaatttgactttactttatctttt 43141834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43985020 - 43985073
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttata 54  Q
    ||||||||||||||| |||||||||| || ||||  ||||| ||||||||||||    
T  43985020 attttcagcttattttcataagctcttcaagatagcttatgaaaacaacttata 43985073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 44238057 - 44238110
Alignment:
Q  7 agcttatttccataagctctacatgataaattatgcaaacaacttatagattat 60  Q
    ||||||||||||||| |||| |||||||| || || ||||||||||||| ||||    
T  44238057 agcttatttccataaactctccatgataacttctgaaaacaacttatagcttat 44238110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 6227803 - 6227703
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    |||||||||| || ||||||||||| ||  |||  ||||| |||| |||||||| |||||| || || |||| | || |||| ||||||||| |||||||    
T  6227803 ttttcagcttgttaccataagctctccaaaatagcttatgaaaaccacttatagtttatataaaaacggtttaatttaattttatcttttgttatataaa 6227704  T
Q  102 t 102  Q
    |    
T  6227703 t 6227703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 33256745 - 33256701
Alignment:
Q  49 cttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||| ||||||||| ||||||||||||||||| |||| ||||    
T  33256745 cttatagtttatatgaaaacagtttgactttattttatctattgt 33256701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 37276778 - 37276722
Alignment:
Q  22 gctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactt 78  Q
    ||||| || ||||| ||||| ||||||||||||  ||||||||| ||||||||||||    
T  37276778 gctctccaggataacttatgaaaacaacttataacttatatgaaaacagtttgactt 37276722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 39983395 - 39983331
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaa 65  Q
    |||||||| |||||| ||| |||||| || ||||  ||||| ||||||||||||| |||||||||    
T  39983395 attttcagtttattttcattagctctccaggatagcttatgaaaacaacttatagcttatatgaa 39983331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 53943657 - 53943557
Alignment:
Q  3 tttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    |||||||||||||||||||||||| ||||| || ||||| ||||||||||||| ||||||||| |||| |||| ||||||||||| ||||| ||| ||||    
T  53943657 tttcagcttatttccataagctctccatgacaacttatgtaaacaacttatagtttatatgaaaacag-ttgattttatttcatcctttgttataaaaat 53943559  T
Q  103 gg 104  Q
    ||    
T  53943558 gg 53943557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 927502 - 927437
Alignment:
Q  28 catgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||||  |||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  927502 catgatagcttatgcaaacaagttatagcttatatgaaaacagtttgactttatttcatcttttgt 927437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 7694028 - 7694115
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    |||||||||||||||||||| |||| || ||||| ||||| ||||| ||||||| |||||  || |||||||||||| ||||||||||    
T  7694028 ttttcagcttatttccataaactctccaggataacttatgaaaacagcttatagcttatacaaaaacagtttgacttcatttcatctt 7694115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 24929545 - 24929445
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    |||||||||||||||||||||||||  |  | |  ||||| ||||||||||||| || |||||| |||||| |||||||||| ||||||||| ||| |||    
T  24929545 ttttcagcttatttccataagctctctagtagagtttatgaaaacaacttatagcttttatgaaaacagttagactttattttatcttttgttatagaaa 24929446  T
Q  102 t 102  Q
    |    
T  24929445 t 24929445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 49219191 - 49219091
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    |||||||||||||||||||| ||||  | ||||  ||||| ||||||||||||| ||||||||| | | ||||||||||||| || |||||| ||| |||    
T  49219191 ttttcagcttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttatagaaa 49219092  T
Q  102 t 102  Q
    |    
T  49219091 t 49219091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 54325055 - 54325155
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    ||||||| |||| ||||||| |||| |||||||  || || ||| | ||||||| ||||||||| ||||||||||||||||| ||||||||| ||| |||    
T  54325055 ttttcagtttatctccataaactctccatgatagcttttgaaaatagcttatagcttatatgaaaacagtttgactttattttatcttttgtaatagaaa 54325154  T
Q  102 t 102  Q
    |    
T  54325155 t 54325155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 55870394 - 55870461
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaatgg 104  Q
    ||||| ||||||||||||| |||| |||| ||||||||||||||||| ||||||||| ||| ||||||    
T  55870394 ttatgaaaacaacttatagcttatgtgaaaacagtttgactttatttgatcttttgttataaaaatgg 55870461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 18628561 - 18628642
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    ||||||||||||||||||||||||| || ||||| ||||| |||||  |||||  |||||| || ||||||||||| |||||    
T  18628561 ttttcagcttatttccataagctctccaagataacttatgaaaacagtttataacttatataaaaacagtttgactatattt 18628642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 51197500 - 51197580
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||| ||||||||||||||||||||  ||||||||||||| ||||||  ||||| ||||||||| | ||||||| |||||||    
T  51197500 tttttagcttatttccataagctctg-atgataaattatgaaaacaatgtatagcttatatgaatatagtttgaatttattt 51197580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 30207589 - 30207679
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||||||||||||||||| ||||  | | ||  ||||| ||||||||||||| ||||||||| ||||||||| ||||||| || ||||||    
T  30207589 ttttcagcttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatgaaaacagtttga-tttattttattttttgt 30207679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 21157820 - 21157742
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgacttta 80  Q
    |||| |||||||||||||||||||| || ||||   |||| ||||| ||||||| ||| ||||| ||||||||||||||    
T  21157820 tttttagcttatttccataagctcttcaggatagcatatgaaaacatcttatagcttacatgaaaacagtttgacttta 21157742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 20936247 - 20936328
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||||| ||||||||||||| |||| || |||| | |||| ||||||| |||||||||||| || ||| |||||||| ||||    
T  20936247 ttttcaccttatttccataatctctccaggatagaatatgaaaacaacctatagattatataaaaacaatttgacttcattt 20936328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 35405999 - 35405934
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaaca 67  Q
    ||||||||||| ||||||||||||| || ||||| || || ||||||| ||||| |||||||||||    
T  35405999 ttttcagcttacttccataagctctccaggataacttttgaaaacaacctatagtttatatgaaca 35405934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 13949897 - 13949949
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    |||| |||||||||||||| ||||||||| ||| ||||||||||||| |||||    
T  13949897 ttatacaaacaacttatagcttatatgaaaacaatttgactttattttatctt 13949949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 8422860 - 8422944
Alignment:
Q  5 tcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    ||||||||||| ||||| |||| || |||| ||| || ||||||||||||| ||||||||| |||   ||||||||||| |||||||    
T  8422860 tcagcttatttgcataaactctccaagatagattgtgaaaacaacttatagcttatatgaaaaca--atgactttattttatctttt 8422944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 11802586 - 11802495
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||||||||||  |||||||||| ||| |||  ||||| ||||||||| ||| |||| |||  | | ||||||||||||| |||||||||    
T  11802586 ttttcagcttattctcataagctctccataatagcttatgaaaacaacttgtagcttatgtgagaaaaatttgactttattttatcttttgt 11802495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36722686 - 36722757
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtt 72  Q
    ||||| ||||||||| |||||||||| || ||||| ||||  ||||||||||||  ||||||||| ||||||    
T  36722686 attttaagcttattttcataagctcttcaggataacttatcaaaacaacttataacttatatgaaaacagtt 36722757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 4071892 - 4071834
Alignment:
Q  44 aacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    |||||||||||| ||||||||| | | ||||||||||||| ||||||||| ||| ||||    
T  4071892 aacaacttatagcttatatgaaaataatttgactttattttatcttttgttatagaaat 4071834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 27623675 - 27623587
Alignment:
Q  17 cataagctctacatgataaattatgcaaacaactt---atagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    |||||||||| || ||||| ||||| |||||||||   |||| |||||| || | ||||||||||||||| ||||||||| ||| ||||    
T  27623675 cataagctctccaggataacttatgaaaacaacttcttatagcttatattaaaatagtttgactttattttatcttttgttatacaaat 27623587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 30581702 - 30581784
Alignment:
Q  9 cttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    ||||||||||||| |||| || ||||| ||||  ||||| ||||||| ||||| ||| | |||||||||| |||| |||||||    
T  30581702 cttatttccataaactctccaagataacttattaaaacagcttatagcttatacgaaaatagtttgacttcattttatctttt 30581784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 35064907 - 35064817
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    |||||||||||||||||||| |||| |||||||  ||||| ||||| | |||||  ||||  || |||||||  |||||||| ||||||||    
T  35064907 ttttcagcttatttccataaactctccatgatatcttatgaaaacagcatatagcctatacaaaaacagtttatctttattttatcttttg 35064817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 52735169 - 52735083
Alignment:
Q  7 agcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||||||||||||||||| || ||||  ||| | ||||||| ||||  |||||||||   | ||||||||||||| |||||||||    
T  52735169 agcttatttccataagctcttcaagatagcttacgaaaacaacatataacttatatgaaagtaatttgactttattttatcttttgt 52735083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 29263422 - 29263341
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    ||||||||||||||||| ||||||| || ||||  ||||| ||||||||||| | |||| |||| ||| | | |||||||||    
T  29263422 ttttcagcttatttccacaagctctgcaggatagcttatgaaaacaacttatcgcttatttgaaaacaatgtaactttattt 29263341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 33534187 - 33534276
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    |||||||||||||| ||||||||||  |  |||| ||| | ||||||||| ||||||||||  | || |||||| ||||||| |||||||    
T  33534187 ttttcagcttattttcataagctctcaaaaataatttacgaaaacaacttgtagattatatagaaacggtttgattttattttatctttt 33534276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 49086006 - 49085941
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||| ||||||||||||  || |||||| | |||||||| |||||| ||||||||| ||||||||    
T  49086006 ttatgaaaacaacttataacttgtatgaaaatagtttgacattattttatcttttgttatataaat 49085941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 6466063 - 6466163
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataa 100  Q
    ||||||| ||||||||||||| ||||  |  |||  ||||| |||||||||||||||||||  || | | ||| ||||||||| ||||| ||| ||||||    
T  6466063 attttcaacttatttccataatctctctagaatagcttatggaaacaacttatagattatacaaaaagaatttcactttatttgatcttgtgttatataa 6466162  T
Q  101 a 101  Q
    |    
T  6466163 a 6466163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 10192335 - 10192236
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    |||||| ||||||| |||| ||||| || ||||  || || ||||||||||||  ||||||||| ||| ||||||||||||  ||||||||| ||| |||    
T  10192335 ttttcaacttattttcata-gctctccaggatagcttttgaaaacaacttataacttatatgaaaacaatttgactttattctatcttttgttataaaaa 10192237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 25434519 - 25434567
Alignment:
Q  43 aaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    ||||||||||||| ||||||||| |||  |||||||||||| |||||||    
T  25434519 aaacaacttatagcttatatgaaaacatattgactttattttatctttt 25434567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 42866115 - 42866047
Alignment:
Q  7 agcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttga 75  Q
    |||||| |||||||||||||  | ||||  ||||| ||||||||||||| |||||| || |||||||||    
T  42866115 agcttacttccataagctctcaaggatagcttatgaaaacaacttatagcttatataaaaacagtttga 42866047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 45128328 - 45128428
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    ||||||||||||||||||||||| || | || |  ||||| |||||| |||||| ||||||||  | | ||||| || |||| ||||||||| ||| |||    
T  45128328 ttttcagcttatttccataagctttataggacagtttatgaaaacaatttatagcttatatgagaataatttgatttgattttatcttttgttatagaaa 45128427  T
Q  102 t 102  Q
    |    
T  45128428 t 45128428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 51630163 - 51630063
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    |||||||||||||| |||||  ||| || ||||  ||||| ||| | ||||||| |||||| || ||| ||| ||||||||| ||||||||  |||||||    
T  51630163 ttttcagcttattttcataaattcttcaagatagcttatgaaaatagcttatagcttatatcaaaacaatttaactttattttatcttttgctatataaa 51630064  T
Q  102 t 102  Q
    |    
T  51630063 t 51630063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 2117455 - 2117355
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    |||| |||||||||| |||||||||  | ||||| ||||| ||||||||||||||||||||||| | ||||||||||| ||| ||| ||||||||| |||    
T  2117455 tttttagcttatttcaataagctctctaggataacttatgaaaacaacttatagattatatgaaaatagtttgactttgttttatcctttgtcatagaaa 2117356  T
Q  102 t 102  Q
    |    
T  2117355 t 2117355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 32386581 - 32386670
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    |||||||||||||| |||||||||| || ||||| | ||| ||||||| ||||  ||||||||| ||| |||||| |||||| |||||||    
T  32386581 ttttcagcttattttcataagctctccaggataactaatgaaaacaacgtataccttatatgaaaacaatttgaccttattttatctttt 32386670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 1275201 - 1275133
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacag 70  Q
    ||||||||||||||||||||||||| || |||||  |||| ||||| ||||||| ||||||||| ||||    
T  1275201 ttttcagcttatttccataagctctccaggataacatatgaaaacagcttatagcttatatgaaaacag 1275133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 1401158 - 1401067
Alignment:
Q  5 tcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcata 97  Q
    ||||||||| |||||||||||| |||||||  ||||| ||||| ||||||| |||||  ||  |||||||| ||||||| |||||||||||||    
T  1401158 tcagcttatctccataagctctccatgatagcttatgaaaacagcttatagcttatactaaagcagtttgattttattt-atcttttgtcata 1401067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 2027424 - 2027524
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    ||||||||||||||   ||| ||||||||| ||  |||||  |||| ||||||| ||||||||| | ||||||||||||||| ||||||||| ||| |||    
T  2027424 ttttcagcttatttatttaaactctacatgctagcttatgagaacagcttataggttatatgaaaatagtttgactttattttatcttttgttataaaaa 2027523  T
Q  102 t 102  Q
    |    
T  2027524 t 2027524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 33787763 - 33787863
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    |||||||| |||||||||||||||| || ||||| ||||| ||||| ||||||  |||||||||  || ||||||||| ||| || |||||| ||| |||    
T  33787763 ttttcagcctatttccataagctctccaagataacttatgaaaacagcttataacttatatgaaatcaatttgactttgttttatattttgttatagaaa 33787862  T
Q  102 t 102  Q
    |    
T  33787863 t 33787863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 281866 - 281957
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||||||||||||||| ||||||  | ||||  ||||| | ||| ||||||| ||||||||| |||  |||||||||||| |||||||||    
T  281866 ttttcagcttatttccatgagctctctaggatagcttatgaacacagcttatagcttatatgaaaacaagttgactttattttatcttttgt 281957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 3155227 - 3155137
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||||||||||||| ||||| || ||||  ||||| ||| | ||||||| ||||||| | ||||||||||||| ||| |||||||||    
T  3155227 ttttcagcttatttccata-gctctccaggatatcttatgaaaatagcttataggttatatggaaacagtttgactttgttttatcttttgt 3155137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8420214 - 8420296
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    ||||||| |||||||||||||||||| ||| |||  ||| |  |||| ||||||  |||||| ||||||||||||||||||||    
T  8420214 attttcaacttatttccataagctctccattatagcttacgagaacagcttatattttatataaacacagtttgactttattt 8420296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 24836224 - 24836317
Alignment:
Q  6 cagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||||||||||||||||||| |||||||  ||| |   | ||||||||| ||||| ||| ||| ||||||||||||| ||||||||| ||| ||||    
T  24836224 cagcttatttccataagctctccatgatagcttacg---aaaacttatagtttatacgaaaacaatttgactttattttatcttttgttatagaaat 24836317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 4006767 - 4006666
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataa 100  Q
    ||||||||||||||| ||||| ||||    ||||  ||||| ||||||||||||| |||||| || ||| ||||||||||||| ||| ||||| ||| ||    
T  4006767 attttcagcttattttcataacctctcagggatagcttatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaa 4006668  T
Q  101 at 102  Q
    ||    
T  4006667 at 4006666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 1408285 - 1408324
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatg 41  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  1408285 ttttcagcttatttccataagctctatatgataacttatg 1408324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 5329024 - 5328926
Alignment:
Q  3 tttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||| ||||||| ||||| |||| |||||||| ||| | ||||| |||||| ||||||| || |  |||||||||||||| ||||||||| ||| ||||    
T  5329024 tttcatcttattttcataaactctccatgataacttacgaaaacagcttata-attatataaaaatggtttgactttattttatcttttgttatagaaat 5328926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 6310283 - 6310342
Alignment:
Q  43 aaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||||||||||| ||||||||| ||| || ||||||| |||||||||||| ||| ||||    
T  6310283 aaacaacttatagcttatatgaaaacaattagactttacttcatcttttgttatagaaat 6310342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 25100096 - 25100005
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    ||||||| |||||||| |||||||||  | ||||  ||||| ||||||||||||  || |||||| ||| ||||||| |||||||| |||||    
T  25100096 attttcaacttatttctataagctctttaagatagcttatgaaaacaacttataacttctatgaaaacaatttgactctatttcatattttg 25100005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 28088240 - 28088335
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcata 97  Q
    |||| ||||||||||||| |||||| |||||||  ||||| |||||  |||||| ||||||||| ||| | ||  ||||||| ||||||| |||||    
T  28088240 ttttgagcttatttccatgagctctccatgatagcttatgaaaacagtttatagcttatatgaaaacaatctgcatttattttatcttttatcata 28088335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 1498033 - 1497943
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    |||||| ||||||| |||||||||| || ||||  ||||| ||||  ||||||  | ||||||| ||||||||||||||||| | ||||||    
T  1498033 ttttcaccttattttcataagctctccaagatagtttatgaaaacttcttataactcatatgaaaacagtttgactttattttaccttttg 1497943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 20671884 - 20671973
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    ||||||||||| ||||| |||||||  ||||||  ||||| |||||| ||| || ||||| ||| ||| ||||||||||||| ||||||||    
T  20671884 ttttcagcttacttcca-aagctctctatgatagtttatgaaaacaatttaaagcttatacgaaaacaatttgactttattttatcttttg 20671973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 3181093 - 3181177
Alignment:
Q  8 gcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||| ||| ||||| || ||||| ||||| |||||  |||| | ||||||||| || |||||||||||||| |||||||||    
T  3181093 gcttatttcaata-gctctccaagataacttatgaaaacagtttatggtttatatgaaaacggtttgactttattttatcttttgt 3181177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 10452413 - 10452478
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||| ||||||||||||| ||||||||| | ||||||| ||||||| || |||||| ||| ||||    
T  10452413 ttatggaaacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaat 10452478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 27792924 - 27792833
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||||||||| |||||||||||||||||  ||||| |||||||||  || ||||||||| | |||||||| |||||| |||||||||    
T  27792924 ttttcagcttatttctataagctctacatgatagtttatgaaaacaacttgcagcttatatgaaaatagtttgaccttattttatcttttgt 27792833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 24887301 - 24887401
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    ||||||||||||| ||||||||||| || ||||  ||||| ||||| ||| ||| ||||||||| ||||||||||||||||| |||| |||| ||| |||    
T  24887301 ttttcagcttattcccataagctctccaggatagcttatgaaaacagcttttagcttatatgaatacagtttgactttattttatctattgttatagaaa 24887400  T
Q  102 t 102  Q
    |    
T  24887401 t 24887401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 20192624 - 20192724
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    |||||| || ||||||||||||||| |   |||| |||   ||||| ||||||||||||||||| || |||||||||||||| ||||||||| |||||||    
T  20192624 ttttcaactcatttccataagctctcccgaataagttacaaaaacagcttatagattatatgaaaactgtttgactttattttatcttttgttatataaa 20192723  T
Q  102 t 102  Q
    |    
T  20192724 t 20192724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 14548739 - 14548802
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaa 65  Q
    ||||||||||||||||||||||||| ||  |||| ||||| ||||||||||||| |||||||||    
T  14548739 ttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaa 14548802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 23785307 - 23785220
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    |||||||||| |||||||||||||| ||||| |  || || |||||  |||||| ||||||||| ||||||||||||||||| |||||    
T  23785307 ttttcagcttgtttccataagctctccatgagagcttgtgaaaacagtttatagcttatatgaatacagtttgactttattttatctt 23785220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 45432957 - 45433046
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    |||||||||||||||||||||||||||| ||| | || || |||||| |||||| | ||||||| ||| ||| |||| |||| |||||||    
T  45432957 ttttcagcttatttccataagctctacaggatgacttgtgaaaacaatttatagctcatatgaaaacaatttaacttcattttatctttt 45433046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 36101620 - 36101533
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataa-attatgcaaacaacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    |||||||||||||| |||||||||| || ||||  || ||| ||||||||||||||||||| |||  |||||||||||||||| |||||    
T  36101620 ttttcagcttattttcataagctcttcaggatagtataatg-aaacaacttatagattatacgaaatcagtttgactttattttatctt 36101533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 51510216 - 51510271
Alignment:
Q  7 agcttatttccataagctctacatgataaattatgcaaacaacttatagattatat 62  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||||||    
T  51510216 agcttatttccataagctctccacgataacttatgaaaacaacttatagtttatat 51510271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 20502086 - 20502176
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacag-tttgactttatttcatctttt 91  Q
    |||||||||||||  |||||||||| || ||||  ||||| ||||| |||||||  |||||||| |||| ||||||||||||| |||||||    
T  20502086 ttttcagcttattctcataagctcttcaggatagcttatgaaaacagcttatagcgtatatgaaaacagttttgactttatttgatctttt 20502176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 1816635 - 1816546
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    ||||||||||||||  ||||||||| ||  |||  ||||| ||||||||||||  |||||  || ||||||||||||||||| |||||||    
T  1816635 ttttcagcttattttgataagctctccagtatagcttatgaaaacaacttatatcttatacaaaaacagtttgactttattttatctttt 1816546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 21367719 - 21367638
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||||||||||||| |||||| ||| || ||||  ||||| |||||||||||| |||||| ||| ||| ||| |||||||||    
T  21367719 ttttcagcttattttcataagttctccaagatagcttatgaaaacaacttatacattatacgaaaacaatttaactttattt 21367638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 22232871 - 22232778
Alignment:
Q  9 cttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||||| ||||||| ||||||||||  ||||| ||| | ||||    ||||||||| ||||||||||||||||| ||| ||||| ||||||||    
T  22232871 cttattttcataagccctacatgatagcttatgaaaatagcttacgacttatatgaaaacagtttgactttattttatcatttgttatataaat 22232778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 23315676 - 23315591
Alignment:
Q  4 ttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    |||||||||||||||||||||||  |  |||  ||||| ||||| |||||||  |||||||| ||| ||||||||||||| |||||    
T  23315676 ttcagcttatttccataagctctttagaatagcttatggaaacatcttatagcctatatgaaaacaatttgactttattttatctt 23315591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 28779367 - 28779322
Alignment:
Q  43 aaacaacttatagattatatgaacacagtttgactttatttcatct 88  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||    
T  28779367 aaacaacttatagcttatatgaaaatagtttgactttatttcatct 28779322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 48286831 - 48286908
Alignment:
Q  5 tcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatt 82  Q
    |||||||||||| |||||||||||||||||| ||||| |||||  |||||  ||||||| | ||| ||| ||||||||    
T  48286831 tcagcttatttctataagctctacatgataacttatgaaaacagtttataacttatatggaaacaatttaactttatt 48286908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 237449 - 237397
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttata 54  Q
    |||||||||||||||| ||||||||| | ||||| ||||| ||||||||||||    
T  237449 ttttcagcttatttccgtaagctctataggataacttatgaaaacaacttata 237397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 1125785 - 1125873
Alignment:
Q  3 tttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatg-aacacagtttgactttatttcatcttt 90  Q
    |||||||||| ||||||||||||| || ||||| ||| | |||||| |||||| ||||||| || ||||||||| || |||| ||||||    
T  1125785 tttcagcttacttccataagctctccaagataacttaagaaaacaagttatagcttatatgaaaaacagtttgaattgattttatcttt 1125873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 2318697 - 2318609
Alignment:
Q  2 ttttcagcttatttccataagctctacatga-taaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    ||||||||||||||| ||||||||| || || ||| ||||  ||||||||||||| ||||||||| ||| ||||| || |||| |||||    
T  2318697 ttttcagcttatttctataagctctccaagaataacttataaaaacaacttatagtttatatgaaaacaatttgatttgattttatctt 2318609  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 33965505 - 33965600
Alignment:
Q  1 attttcagcttattt-ccataagctctacatgataaattatgcaaacaacttatagatt--atatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||||| ||| ||||||||||| || ||||  ||||| ||||| ||||||| ||  ||||||| ||||||||||||||||| | |||||||    
T  33965505 attttcagctttttttccataagctcttcaagatagcttatgaaaacatcttatagcttttatatgaaaacagtttgactttattttaccttttgt 33965600  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 36139930 - 36139843
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataa-attatgcaaacaacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    |||||||||||||| |||||||||| || ||||  || ||| ||||||||||||| ||||| |||  |||||||||||||||| |||||    
T  36139930 ttttcagcttattttcataagctcttcaagatagtataatg-aaacaacttatagcttatacgaaatcagtttgactttattttatctt 36139843  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 43115108 - 43115048
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatat 62  Q
    |||||||||||||||||||||||||  ||||||  | ||| ||||||||||||| ||||||    
T  43115108 ttttcagcttatttccataagctctcaatgatagttcatgaaaacaacttatagcttatat 43115048  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 43875684 - 43875624
Alignment:
Q  18 ataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactt 78  Q
    ||||||||| |||||||  ||||| ||||||||||||| ||||||||  ||||||||||||    
T  43875684 ataagctctccatgatagcttatgaaaacaacttatagcttatatgagaacagtttgactt 43875624  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 44374662 - 44374753
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||| ||||||||||| |||||| || ||||  ||| | |||||| || |||||| |||||| ||| ||||||||||||| |||||||||    
T  44374662 attttcaccttatttccattagctctccaagatatcttacg-aaacaaattttagattgtatgaaaacaatttgactttattttatcttttgt 44374753  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 47904084 - 47904144
Alignment:
Q  5 tcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaa 65  Q
    ||||||||||||| |||||||| || ||||  ||||| |||| ||||||||||||||||||    
T  47904084 tcagcttatttccgtaagctcttcacgatagcttatgaaaaccacttatagattatatgaa 47904144  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 27290919 - 27291006
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    |||||||||||||||||| | |||| || ||||  | ||||||||| ||| ||||||||||||| | |||| || ||||||| |||||    
T  27290919 ttttcagcttatttccatgaactctgcaggatagctaatgcaaacagcttttagattatatgaaaaaagttcgaatttattttatctt 27291006  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 44295581 - 44295522
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattata 61  Q
    ||||||||||||||||||||||||| |   |||  ||||| |||||||||||||||||||    
T  44295581 ttttcagcttatttccataagctctccgatatatcttatgaaaacaacttatagattata 44295522  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 54775178 - 54775080
Alignment:
Q  3 tttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||| ||||||| ||||| |||| |||||||| ||| | ||||| |||||| ||||||| || |  |||||||||||||| ||||||||| ||| ||||    
T  54775178 tttcatcttattttcataaactctccatgataacttacgaaaacagcttata-attatataaaaatggtttgactttattttatcttttgttatagaaat 54775080  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 25453877 - 25453963
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatct 88  Q
    |||||||||||||| |||||||| | || ||||  ||||| ||| |  |||||| ||||| ||| ||||||||||||||||| ||||    
T  25453877 ttttcagcttattttcataagctttccaggatagtttatgaaaataggttataggttatacgaaaacagtttgactttattttatct 25453963  T

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Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 40122812 - 40122861
Alignment:
Q  43 aaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||||||| || |||||| ||||||||||||||||| |||||||||    
T  40122812 aaacaacttatagctt-tatgaaaacagtttgactttattttatcttttgt 40122861  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 49586984 - 49587034
Alignment:
Q  52 atagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    |||| ||||||||| ||||||||||||||||| ||||||||| ||| ||||    
T  49586984 atagcttatatgaaaacagtttgactttattttatcttttgttatagaaat 49587034  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 8933834 - 8933745
Alignment:
Q  7 agcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcat 96  Q
    ||||||||| |||||||||| || ||||| ||||| ||||||| || || || ||  || | |||||||||||||| ||| |||||||||    
T  8933834 agcttattttcataagctctccaagataacttatgaaaacaacctagagcttctacaaaaatagtttgactttattacattttttgtcat 8933745  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 2201180 - 2201092
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttt 90  Q
    |||||||||| ||||| ||| || | || ||||  | ||| ||||| ||||||| ||||||||| ||||||||||||| ||| ||||||    
T  2201180 ttttcagcttttttccttaaactatccaagatagctaatgaaaacagcttatagcttatatgaaaacagtttgactttgttttatcttt 2201092  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 12923384 - 12923432
Alignment:
Q  43 aaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    ||||||||||||| ||||| |||  |||||||||||||||| |||||||    
T  12923384 aaacaacttatagcttataagaaagcagtttgactttattttatctttt 12923432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 13481348 - 13481256
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||| ||||||| | |||||||| ||| |||| || || | ||||||| ||| |||| |||| | ||||||||||||||| || ||||||    
T  13481348 attttcatcttattttcgtaagctctccataataatttttgaagacaacttgtagcttatttgaaaatagtttgactttattttatattttgt 13481256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 16990179 - 16990255
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactt 78  Q
    |||||||||||||| || ||| ||| |||||||  ||| | ||||||||||||  ||||||||| ||||||| ||||    
T  16990179 ttttcagcttatttgcacaagttcttcatgatagtttaagaaaacaacttatatcttatatgaaaacagtttaactt 16990255  T

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Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 19679387 - 19679427
Alignment:
Q  43 aaacaacttatagattatatgaacacagtttgactttattt 83  Q
    ||||||||||||| ||||| ||| |||||||||||||||||    
T  19679387 aaacaacttatagcttataagaaaacagtttgactttattt 19679427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 21862193 - 21862285
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactt-tatttcatcttttgt 93  Q
    ||||||||||||||||||||||||| |  ||||  | |||  ||| ||| |||| ||||||||| ||| |||||||| ||||| |||||||||    
T  21862193 ttttcagcttatttccataagctctcccagatagctaatgagaactactcatagcttatatgaaaacaatttgacttgtattttatcttttgt 21862285  T

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Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 22214735 - 22214799
Alignment:
Q  38 tatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    |||| ||||||||||||| ||||||||| ||| ||| ||||||||| ||| ||||| ||| ||||    
T  22214735 tatgaaaacaacttataggttatatgaatacaatttcactttattttatcctttgttatagaaat 22214799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 26603244 - 26603164
Alignment:
Q  3 tttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    ||||| |||||||||||||||| | || ||||  |||||||||||| |||||||  |||||||    ||||||||||||||    
T  26603244 tttcaacttatttccataagctttgcaggatagcttatgcaaacaagttatagagaatatgaagctggtttgactttattt 26603164  T

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Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 31337462 - 31337510
Alignment:
Q  45 acaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||||  |||||| || ||||||||||||||||| |||||||||    
T  31337462 acaacttataacttatataaaaacagtttgactttattttatcttttgt 31337510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 36646400 - 36646500
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    |||||| |||||||| |||| ||||  | ||||  ||||| |||||| |||||  ||||||||| ||| ||  ||||||||| ||||||||||||| |||    
T  36646400 ttttcatcttatttctataaactctctaggatagcttatgaaaacaagttataacttatatgaaaacaattatactttattttatcttttgtcatagaaa 36646499  T
Q  102 t 102  Q
    |    
T  36646500 t 36646500  T

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Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 37788877 - 37788821
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||| ||||||||||||||||||| ||| | | || |||||||||| |||||||||    
T  37788877 ttatgaaaacaacttatagattatacgaaaataattggactttattttatcttttgt 37788821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 45205120 - 45205025
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcata 97  Q
    |||||||||||||||||| | ||||||||||||  ||||| ||||||||| ||| ||||||| | | ||||||||||||||| ||||||| |||||    
T  45205120 ttttcagcttatttccatgaactctacatgatagcttatgaaaacaacttctagcttatatggaaatagtttgactttattttatcttttatcata 45205025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 37842373 - 37842463
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    ||||||||||||||  ||||| ||| || ||||  ||||| ||||||||||||| ||||  ||||||||||| ||||||||||||||||||    
T  37842373 ttttcagcttatttttataagttcttcaagatagcttatgaaaacaacttatagcttattcgaacacagtttaactttatttcatcttttg 37842463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 30257735 - 30257646
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    ||||||||||||||| |||||| || || ||||  ||||| |||||||||| || ||||||| | ||||||||||||||||| |||||||    
T  30257735 ttttcagcttatttctataagccctccaggatagtttatgaaaacaacttaaagcttatatggaaacagtttgactttattttatctttt 30257646  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 30259504 - 30259605
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaatt-atgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataa 100  Q
    |||||| |||||||||||||||||| |||||||  || ||||||||| ||||||| |||||| ||  |||||||||||||||| || |||||| ||| ||    
T  30259504 ttttcaacttatttccataagctctccatgatagctttatgcaaacagcttatagcttatatcaaagcagtttgactttattttatattttgttatagaa 30259603  T
Q  101 at 102  Q
    ||    
T  30259604 at 30259605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 8130488 - 8130409
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttat 81  Q
    |||||||||| |||||||||| | | |||||||  ||||| ||||||||||||| |||| |||| |||||||||||||||    
T  8130488 ttttcagcttgtttccataagttttccatgatagcttatgaaaacaacttatagcttatgtgaaaacagtttgactttat 8130409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 34380497 - 34380406
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||||||||| ||||||| |||||||||| ||| | ||||||| ||||   |||||| | ||||||||||||||||  |||||||||    
T  34380497 ttttcagcttatttcaataagctgtacatgataagttacgaaaacaacatataatgtatatgcaaacagtttgactttattgtatcttttgt 34380406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 4078168 - 4078242
Alignment:
Q  3 tttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgact 77  Q
    ||||||||||||| ||| |||||  |||||||  ||||| ||||||||||||||||||||||| | |||||||||    
T  4078168 tttcagcttattttcattagctcgccatgatagcttatgaaaacaacttatagattatatgaaaatagtttgact 4078242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 33527194 - 33527256
Alignment:
Q  31 gataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||| |||||||||    
T  33527194 gataacttatgaaaacagcttatagattatatgaaaacagtttgactgtattttatcttttgt 33527256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 7218092 - 7218173
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||||| ||||||| |||||| ||| || ||||  ||||| ||||||||||||| ||||||||| ||| |||||||||||||    
T  7218092 ttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttattt 7218173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 15360903 - 15360846
Alignment:
Q  45 acaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||||||| ||| ||||    
T  15360903 acaacttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaat 15360846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15515594 - 15515513
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatt 82  Q
    |||||||  ||||||||||||||| | |||||||| ||||| ||||||||||||| ||||| ||| ||| ||||| ||||||    
T  15515594 attttcaatttatttccataagctatccatgataacttatgaaaacaacttatagcttatacgaaaacattttgattttatt 15515513  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 42556648 - 42556749
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataa 100  Q
    |||||||| |||||   |||| |||| |||||||  ||||| ||||||||||||| |||||| ||   ||||||| ||||||||||||||||||||| ||    
T  42556648 attttcagtttattgatataaactctccatgatagcttatgaaaacaacttatagcttatataaaagtagtttgattttatttcatcttttgtcatagaa 42556747  T
Q  101 at 102  Q
    ||    
T  42556748 at 42556749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 12564892 - 12564964
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttg 74  Q
    |||||||||||||||| ||||| ||| | ||||  ||||| ||||||||||||| ||||||||| ||||||||    
T  12564892 ttttcagcttatttccgtaagcactaaaagatagcttatgaaaacaacttatagcttatatgaaaacagtttg 12564964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 25479633 - 25479545
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttt 90  Q
    |||||||||||||| ||||||||||  | ||||  ||||| |||||||||||||  |||||||| ||| |||||| |||||| ||||||    
T  25479633 ttttcagcttattttcataagctctctaggatagcttatgaaaacaacttatagcctatatgaagacaatttgacgttattttatcttt 25479545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 30371200 - 30371104
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatat 98  Q
    ||||||||||||||| ||| ||||| ||  ||   ||||| ||||||||||||| ||||||||| ||| ||||| ||||||| ||||||||| ||||    
T  30371200 ttttcagcttatttcaatacgctctccaaaatgtcttatgaaaacaacttatagcttatatgaaaacaatttgagtttattttatcttttgttatat 30371104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 44032016 - 44032108
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||||||| ||||||||||||||| || ||||| ||| | ||| |  |||||| ||||||||| ||| ||||||||||||| | |||||||    
T  44032016 attttcagctaatttccataagctcttcaagataacttaagaaaatagtttatagcttatatgaaaacaatttgactttattttagcttttgt 44032108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 31517758 - 31517849
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||||||||||| |||||||||| || || | |||||| | ||| ||||||| |||||||||  || ||| ||||||||| |||||||||    
T  31517758 ttttcagcttattttcataagctctccaagacagattatgaagacagcttatagcttatatgaaatcaatttaactttattttatcttttgt 31517849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 39347985 - 39348076
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||||||||||||||||| | || ||||  ||||| ||||||||||||| || |||||  |  ||| |||||||||| |||||||||    
T  39347985 ttttcagcttatttccataagctttgcaggatagtttatgaaaacaacttatagcttgtatgagaatggttggactttattttatcttttgt 39348076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 44940393 - 44940305
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    ||||||||||||||||| || |||| || |||| |||||| ||||||||||||  |||| |||| ||||  ||||||||||| ||||||||    
T  44940393 ttttcagcttatttccacaacctcttcaggatagattatgaaaacaacttataacttatttgaaaacag--tgactttattttatcttttg 44940305  T

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Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 27738203 - 27738289
Alignment:
Q  7 agcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||| |||||||||||| |   |||  ||||| |||||| |||||| ||||||||| ||| ||||||||||||| |||||||||    
T  27738203 agcttatatccataagctctcctgtatagcttatgaaaacaaattatagcttatatgaaaacaatttgactttattttatcttttgt 27738289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 6932980 - 6933081
Alignment:
Q  3 tttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    |||||| ||||||||||||||||| || || || ||||| ||| |||| |||  || |||||| ||| ||||||||||||| || |||||| ||| ||||    
T  6932980 tttcagtttatttccataagctcttcaggacaacttatgaaaagaactaataacttctatgaaaacaatttgactttattttatgttttgttataaaaat 6933079  T
Q  103 gg 104  Q
    ||    
T  6933080 gg 6933081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 3924676 - 3924576
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    ||||| |||||||||||||| |||| || ||||  ||||  |||||||| |||||||||| ||| |||||||| ||| |||| ||||| ||| ||| |||    
T  3924676 ttttcggcttatttccataaactcttcaggatagcttataaaaacaactaatagattatacgaaaacagtttgccttgattttatcttgtgttatagaaa 3924577  T
Q  102 t 102  Q
    |    
T  3924576 t 3924576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 39777715 - 39777615
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    |||| ||||||||||| |||||||| ||| |||| ||| | ||||| | ||||| || ||||||  |||||||||||||||  ||||||||| ||| |||    
T  39777715 tttttagcttatttccttaagctcttcattataacttaagaaaacatcatatagcttgtatgaaagcagtttgactttattctatcttttgttatagaaa 39777616  T
Q  102 t 102  Q
    |    
T  39777615 t 39777615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 46980153 - 46980237
Alignment:
Q  8 gcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    |||||||||||||| || ||||| | |  ||||| |||||| |||||  ||||||||| |||||||| |||||||| ||||||||    
T  46980153 gcttatttccataaactatacataacagtttatgaaaacaatttataacttatatgaaaacagtttgtctttattttatcttttg 46980237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 49175671 - 49175619
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttata 54  Q
    ||||||||||||||||||||| |||||||||||  || |||||| ||||||||    
T  49175671 ttttcagcttatttccataagttctacatgatagcttgtgcaaataacttata 49175619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 5756745 - 5756804
Alignment:
Q  43 aaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||||||||||  ||||||||| ||||||| ||||||| ||||||||||| ||| ||||    
T  5756745 aaacaacttataatttatatgaaaacagtttaactttatatcatcttttgttatagaaat 5756804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 6074485 - 6074426
Alignment:
Q  43 aaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    |||||||| |||| ||||||||| ||||||| ||||||| ||||||||||| ||| ||||    
T  6074485 aaacaactcatagcttatatgaaaacagtttaactttatatcatcttttgttatagaaat 6074426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 7472363 - 7472304
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattata 61  Q
    |||||||||||||| |||||||||| || ||||  ||||| ||||| |||||||||||||    
T  7472363 ttttcagcttattttcataagctctccaagatagcttatggaaacagcttatagattata 7472304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 10581130 - 10581189
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcat 96  Q
    ||||| ||||||||||||| ||| ||||| | ||||||||||||||| ||| ||||||||    
T  10581130 ttatgaaaacaacttatagcttaaatgaaaaaagtttgactttattttatcctttgtcat 10581189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 33723400 - 33723479
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttat 81  Q
    ||||||||||||||||||||||| |||| | ||  ||||| |||||  | |||| ||||||||| ||| |||||||||||    
T  33723400 ttttcagcttatttccataagctttacagggtagcttatgaaaacagttcatagtttatatgaaaacaatttgactttat 33723479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 35017629 - 35017539
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacaca--gtttgactttatttcatctt 89  Q
    ||||||| |||||||||||||||||| || || |  ||||| ||||| | ||||||||||| ||| |||  |||||||||||||| |||||    
T  35017629 attttcaacttatttccataagctctccaggacagcttatgaaaacagcatatagattatacgaaaacagtgtttgactttattttatctt 35017539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 35590910 - 35590969
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattata 61  Q
    ||||||||||||||||||||||||| |||||||  ||||| || | |||||||| |||||    
T  35590910 ttttcagcttatttccataagctctccatgatagcttatgaaatcgacttatagcttata 35590969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 4215424 - 4215334
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    |||||| ||||||| ||||| ||||  | ||||| ||| | |||| ||| |||| ||||||||| ||||||||||||||||| ||| ||||    
T  4215424 ttttcaccttatttgcataaactctcaaggataacttacgaaaacgactcatagtttatatgaaaacagtttgactttattttatcatttg 4215334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 6231834 - 6231916
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatg-aacacagtttgactttattt 83  Q
    ||||||||||||||| ||||| ||| || | ||  ||| | ||||| ||||||||||||||| || |||||||||||||||||    
T  6231834 ttttcagcttatttctataagttcttcaggttagcttacgaaaacagcttatagattatatgaaaaacagtttgactttattt 6231916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 17269295 - 17269221
Alignment:
Q  9 cttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||||| || |||||||| || ||||  ||||| ||||||||||| | ||||||||| ||| |||||||||||||    
T  17269295 cttattaccgtaagctctccaggatagcttatgaaaacaacttattgcttatatgaaaacaatttgactttattt 17269221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 25006087 - 25006133
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    ||||| ||||||||||||| ||||||||| ||| |||||||||||||    
T  25006087 ttatgaaaacaacttatagcttatatgaaaacaatttgactttattt 25006133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 3319950 - 3320039
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    |||||||||||| |||||||| |||  ||||||  ||| |  |||||||||||| |||||||||  |||||  ||||||||| |||||||    
T  3319950 ttttcagcttatatccataagatctctatgatagcttacgttaacaacttatagtttatatgaaaccagttctactttattttatctttt 3320039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 5150989 - 5150908
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||||| |||||||| ||||||||| |||||||  ||||| |||||| ||| |  ||| ||||| | |||||||||||||||    
T  5150989 ttttcaacttatttctataagctcttcatgatagcttatgaaaacaaattacaacttaaatgaaaatagtttgactttattt 5150908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 5421979 - 5422032
Alignment:
Q  43 aaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcat 96  Q
    ||||||||||||| ||||| ||| ||| ||||||| ||||| ||||||||||||    
T  5421979 aaacaacttatagcttataagaaaacaatttgactatattttatcttttgtcat 5422032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 7273992 - 7274057
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||| ||||| ||||||  || |||||| ||| ||||||||||||||||||||||| ||| ||||    
T  7273992 ttatggaaacagcttataacttgtatgaaaacaatttgactttatttcatcttttgttataaaaat 7274057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 12477305 - 12477394
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    |||||||||||||||||||  |||| |||||||  ||||  ||| | | ||||  ||| ||||| ||||||||||||||||| |||||||    
T  12477305 ttttcagcttatttccatacactctccatgatagcttattaaaaaagcatatatcttacatgaaaacagtttgactttattttatctttt 12477394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 27887136 - 27887217
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||| |||||||||  ||| ||||| |||||||  ||||| ||||||||||||| ||||||| | |  ||||||||||||||    
T  27887136 tttttagcttatttttatatgctctccatgatagtttatgaaaacaacttatagcttatatggaaattgtttgactttattt 27887217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 37272633 - 37272694
Alignment:
Q  31 gataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    ||||| ||||| ||||| ||||||| ||||||||| |||| |||||||||||| | ||||||    
T  37272633 gataatttatgaaaacagcttatagcttatatgaaaacagattgactttattttaccttttg 37272694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 49517087 - 49517022
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||| ||||| ||||||| ||| ||||| ||| ||||||||||||| ||||||||| ||| ||||    
T  49517087 ttatgaaaacagcttatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaat 49517022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 4200281 - 4200181
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    |||| ||||||||| ||||||| || || ||||  ||| | ||||||  ||||| ||||||||| |||  |||||||||||| ||||||||| ||| |||    
T  4200281 ttttaagcttattttcataagccctccaggatatcttacgaaaacaatatatagcttatatgaaaacaacttgactttattttatcttttgttataaaaa 4200182  T
Q  102 t 102  Q
    |    
T  4200181 t 4200181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 5047198 - 5047166
Alignment:
Q  2 ttttcagcttatttccataagctctacatgata 34  Q
    ||||||||||||||||||||||||| |||||||    
T  5047198 ttttcagcttatttccataagctcttcatgata 5047166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7137015 - 7137075
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattata 61  Q
    ||||||||||||||| |||||| ||| || ||||  ||||| ||||| |||||||||||||    
T  7137015 attttcagcttattttcataagttctccaagatagcttatgaaaacagcttatagattata 7137075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 12564517 - 12564616
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    ||||||||||||||||||||| ||| || ||||  ||||| ||||||| ||||  || |||||| || |||||||||||  | ||||||||| ||| |||    
T  12564517 ttttcagcttatttccataagttctccaagatagcttatgaaaacaacctataccttgtatgaa-acggtttgactttaggttatcttttgttatagaaa 12564615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 28467360 - 28467416
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||| ||||||||| ||| ||||||||| | | ||||||||||||| |||||||||    
T  28467360 ttatgaaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgt 28467416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 52286731 - 52286639
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||| ||||||||||||||| |||| || ||| | ||||| ||| |  |||||| ||||||||| |  |||| ||||||||| |||||||||    
T  52286731 atttttagcttatttccataaactcttcaagatgacttatgaaaatagtttatagcttatatgaaaattgtttaactttattttatcttttgt 52286639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 44151498 - 44151589
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||||||||||||||||| | || ||||  ||||| ||||||||||||| ||||||| | ||||||| ||||||||  |||||||||    
T  44151498 ttttcagcttatttccataagcttttcaagatagtttatgaaaacaacttatagcttatatggaaacagttttactttattctatcttttgt 44151589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 1417281 - 1417216
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||| ||||||||||| | ||||||||| ||| ||||||||||||| ||||||||| ||||||||    
T  1417281 ttatgaaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttatataaat 1417216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 31338560 - 31338471
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    |||||| ||||||| ||||||||| | | ||||  ||||| ||||||||||||  |||||| || ||||||||||||||||| |||||||    
T  31338560 ttttcaccttattttcataagctccataggatagtttatggaaacaacttataacttatataaaaacagtttgactttattttatctttt 31338471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 45777230 - 45777287
Alignment:
Q  43 aaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataa 100  Q
    ||||||||||||| ||||||||| |||||||||||| |||| ||||||||| ||||||    
T  45777230 aaacaacttatagtttatatgaaaacagtttgacttaattttatcttttgttatataa 45777287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 9527143 - 9527199
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||||  |||||||||    
T  9527143 ttatgaaaacaacttatagtttatatgaaaacagtttgactttattatatcttttgt 9527199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 17989049 - 17989132
Alignment:
Q  10 ttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||| |||||||||| || || |  ||||| |||||| |||||| ||||||||| ||||||||||||||||| || ||||||    
T  17989049 ttattttcataagctcttcaggagagcttatgaaaacaaattatagtttatatgaaaacagtttgactttattttatattttgt 17989132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 29363562 - 29363483
Alignment:
Q  10 ttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    ||||||||||||||||| || ||||| |||||  |||| ||||||  | ||||||| ||||||||||||||||| |||||    
T  29363562 ttatttccataagctctccaggataacttatgataacagcttataactaatatgaaaacagtttgactttattttatctt 29363483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 30456476 - 30456559
Alignment:
Q  10 ttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||| |||||||||| || ||||  ||||| |||| |||||||  ||||||||| ||| ||||||||||||| |||||||||    
T  30456476 ttattttcataagctctccaagatagtttatgaaaaccacttataacttatatgaaaacaatttgactttattttatcttttgt 30456559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 38010766 - 38010675
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||| |||||||||||||||| |||  | |||| |||||| ||||| ||||||| ||||||||| ||| |||| |||| ||| |||||||||    
T  38010766 tttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttggctttgttttatcttttgt 38010675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 39506009 - 39505919
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    ||||||||||||||||||||| |||| ||  |||  ||||| ||||||||||  | ||||||||| ||||||||||| ||||| ||||||||    
T  39506009 attttcagcttatttccataaactctccagaatagcttatgaaaacaacttaatgcttatatgaa-acagtttgactctatttaatcttttg 39505919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 21185140 - 21185039
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    ||||||||||||||| ||||||||| ||  |||  ||||| ||||| ||||||||||||||||| ||||| | | |||| || || |||||||||| |||    
T  21185140 ttttcagcttatttcaataagctcttcaa-atatcttatggaaacagcttatagattatatgaaaacagtctaaatttaatttattttttgtcatagaaa 21185042  T
Q  102 tgg 104  Q
    |||    
T  21185041 tgg 21185039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 44910656 - 44910566
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    ||||| ||||||||||| ||||||| |||||||  ||||| ||||||||| ||| || | |||| | |||||||||||||||  |||||||    
T  44910656 ttttcggcttatttccacaagctctccatgatagtttatgaaaacaacttttagcttgtgtgaaaaaagtttgactttattttctcttttg 44910566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 18516303 - 18516348
Alignment:
Q  38 tatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||||    
T  18516303 tatggaaacaacttatagcttatatgaacacaatttgactttattt 18516348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 45813239 - 45813288
Alignment:
Q  43 aaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    ||||||||||||||||||||||| |||  |||||||||||| ||||||||    
T  45813239 aaacaacttatagattatatgaaaacaagttgactttattttatcttttg 45813288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 5006562 - 5006618
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||| |||||| |||||  ||||||||| ||||||||||||||||| |||||||||    
T  5006562 ttatgaaaacaatttataccttatatgaaaacagtttgactttattttatcttttgt 5006618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 27481320 - 27481388
Alignment:
Q  10 ttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactt 78  Q
    ||||||||||||||| | |||||||  ||||| ||| ||||||||| ||||||| | ||||||||||||    
T  27481320 ttatttccataagctatccatgatagcttatgaaaataacttatagcttatatggaaacagtttgactt 27481388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 36370713 - 36370645
Alignment:
Q  10 ttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactt 78  Q
    ||||||||||||||||| || ||||  ||||| ||||||||||||| |||| |||| ||||||| ||||    
T  36370713 ttatttccataagctcttcaggatagtttatggaaacaacttatagcttatgtgaaaacagtttaactt 36370645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 1373567 - 1373658
Alignment:
Q  11 tatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||| ||||||| || || ||||  ||||| |||||  ||||||| |||||||| | |||||||||||| || ||||||||||||| ||||    
T  1373567 tattttcataagcccttcaagatagtttatgaaaacaggttatagactatatgaaaaaagtttgactttaatttatcttttgtcataaaaat 1373658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 3610758 - 3610849
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||||||||| |||||||||  | ||||  ||| | ||||||||||||| |||||  || |||||||| ||| |||| |||||||||    
T  3610758 ttttcagcttatttctataagctctctaggatagtttacgaaaacaacttatagcttataccaaaacagtttgccttcattttatcttttgt 3610849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 28165143 - 28165052
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||| |||||||||||||||||| |||||||  ||||  | |||  |||||| |||||| || ||| |||||||| |||| |||||||||    
T  28165143 ttttcaacttatttccataagctctccatgatagcttataaagacagtttatagcttatattaaaacaatttgacttcattttatcttttgt 28165052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 24909716 - 24909638
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgacttta 80  Q
    |||||||| |||||||| ||||||| ||  |||  ||||| ||||||||||||| ||||||||| | | ||||||||||    
T  24909716 ttttcagcatatttccacaagctctccacaatatcttatgaaaacaacttatagcttatatgaaaataatttgacttta 24909638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 34754828 - 34754905
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgacttta 80  Q
    |||||||||||||||||| |||||| || ||||  ||||| ||||||||||  | ||||||||| ||| ||||||||||    
T  34754828 ttttcagcttatttccatcagctct-caggatagtttatgaaaacaacttacggcttatatgaagacattttgacttta 34754905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 3559087 - 3559010
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgacttt 79  Q
    ||||||||||||||| ||||||| |||| ||||  | ||| ||||  ||||||||||||||| | ||||| |||||||    
T  3559087 ttttcagcttatttctataagctatacaagatagttaatgaaaacggcttatagattatatgtaaacagtctgacttt 3559010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 1350269 - 1350337
Alignment:
Q  11 tatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgacttt 79  Q
    ||||| |||||||||| || ||||  ||||| ||||| |||||||||||| |||| | |||||||||||    
T  1350269 tattttcataagctcttcaggatagtttatgaaaacagcttatagattatgtgaaaaaagtttgacttt 1350337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 24363619 - 24363671
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttata 54  Q
    |||||||||||||||||||| |||| || ||||  ||||| ||||||||||||    
T  24363619 ttttcagcttatttccataacctctccaggatagcttatgaaaacaacttata 24363671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 44241912 - 44241852
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattata 61  Q
    |||||||||||||||| ||||||| | || ||||  ||||| ||||||||||||| |||||    
T  44241912 attttcagcttatttctataagctattcaagatagcttatgaaaacaacttataggttata 44241852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 26284813 - 26284894
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||||||||||||| |||||||| |||| ||||| ||| | ||||||||| ||  ||||||||| |||||||||||||||||    
T  26284813 ttttcagcttattttcataagctatacaggataacttacgaaaacaacttgtactttatatgaaaacagtttgactttattt 26284894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 30013271 - 30013179
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||||||||||||| || |||||| ||||  ||||| ||||| ||||||| ||||||| | |||||||||||| |||| | |||||||    
T  30013271 attttcagcttatttccattagttctacaggatagcttatgaaaacagcttatagcttatatggaaacagtttgacttaatttgaccttttgt 30013179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 11795144 - 11795049
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcata 97  Q
    ||||||||||||||||||||||||| ||| |||  ||||| || || ||||||  ||||||||| ||||| ||||||||||  || ||||||||||    
T  11795144 ttttcagcttatttccataagctctccataatagcttatgaaatcagcttataacttatatgaaaacagtgtgactttattgtatgttttgtcata 11795049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 41336663 - 41336764
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    ||||||||||||||||  ||||||| |  ||||  ||||| |||||| || ||| ||||||||| ||| ||||||| ||||| ||||||||||||| |||    
T  41336663 ttttcagcttatttccgcaagctctcctagatagcttatgaaaacaagttctagtttatatgaaaacaatttgactatattttatcttttgtcataaaaa 41336762  T
Q  102 tg 103  Q
    ||    
T  41336763 tg 41336764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 6509320 - 6509408
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    ||||||| |||||||| ||||||||| || ||||  ||||| ||||| ||||||| |||||| || ||| ||||||||||||| |||||    
T  6509320 attttcaccttatttcaataagctctccaggatagcttatgaaaacagcttatagcttatataaatacaatttgactttattttatctt 6509408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 7646030 - 7645955
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgact 77  Q
    ||||||||||||||||||||||| |||| | ||  ||||| ||||||||||||| ||| ||||| ||| |||||||    
T  7646030 ttttcagcttatttccataagctttacaggttagcttatgaaaacaacttatagcttacatgaaaacaatttgact 7645955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 31862545 - 31862454
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||||||||||| ||||||||||  | ||||| ||||| ||||| ||||||| ||||| ||  | ||||||||||||| | |||||||||    
T  31862545 ttttcagcttattttcataagctctctaggataacttatgaaaacatcttatagcttatacgagaatagtttgactttatattatcttttgt 31862454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 7918791 - 7918844
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatag 55  Q
    ||||||||||||||||| |||||||||| ||||  ||||| |||||||||||||    
T  7918791 ttttcagcttatttccacaagctctacaagatagcttatgaaaacaacttatag 7918844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 10383933 - 10383856
Alignment:
Q  6 cagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||||||||||||||||||||| ||||||  ||| | ||||| | ||||||||||| ||| |||| |||| |||||||    
T  10383933 cagcttatttccataagctctatatgatagtttacgaaaacagcatatagattatacgaaaacagcttgattttattt 10383856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 29973133 - 29973052
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    ||||||| |||||||||||| ||||  | ||||  ||||| ||||||||||||| |||| |||| | |||||||||||||||    
T  29973133 ttttcagtttatttccataaactctcaaggatagcttatgaaaacaacttatagcttatgtgaaaatagtttgactttattt 29973052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 34551166 - 34551073
Alignment:
Q  8 gcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    |||||||| |||||||||| || ||||| ||| | ||||||||||||  ||| ||||| ||| |||||||| || | ||||||||| |||||||    
T  34551166 gcttattttcataagctctccaggataacttaagaaaacaacttataacttaaatgaaaacaatttgacttgatgttatcttttgttatataaa 34551073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 37776725 - 37776802
Alignment:
Q  5 tcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatt 82  Q
    ||||||||||||||||| |||| || |||   | ||| ||||||||||||| |||||| |||||| ||||||||||||    
T  37776725 tcagcttatttccataaactcttcaagattgctgatgtaaacaacttatagtttatataaacacaatttgactttatt 37776802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 39561559 - 39561640
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    ||||||||||||||||||||||| | |||||||  ||| | ||||||||||||| ||| ||||| |||  | ||||||||||    
T  39561559 ttttcagcttatttccataagcttttcatgatagcttacgaaaacaacttatagtttagatgaaaacaaatcgactttattt 39561640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 12361244 - 12361156
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttt 90  Q
    |||||| ||||||||||| |||||| |   |||| ||||| ||||| ||||||| ||||||||| ||| |||||||| |||| ||||||    
T  12361244 ttttcaacttatttccattagctctcctgaataacttatgaaaacagcttatagcttatatgaaaacaatttgacttcattttatcttt 12361156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 34770909 - 34770853
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||| ||||||||||||| ||| ||||| ||| ||||||||||||| |||||||||    
T  34770909 ttatgaaaacaacttatagcttaaatgaaaacaatttgactttattttatcttttgt 34770853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 43704394 - 43704473
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaat--tatgcaaacaacttatagattatatgaacacagtttgacttt 79  Q
    |||| |||||||||||||||||| |  | ||||| |  |||| ||||||||||||| ||||||||| |||||||||||||    
T  43704394 ttttaagcttatttccataagcttttgaggataactcttatgaaaacaacttatagtttatatgaaaacagtttgacttt 43704473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 10460646 - 10460579
Alignment:
Q  11 tatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactt 78  Q
    ||||||| ||||||||||||||||  ||||| |||| |||||||| || |||||| | ||||||||||    
T  10460646 tatttccgtaagctctacatgatagcttatgaaaaccacttatagcttgtatgaaaatagtttgactt 10460579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 11183597 - 11183506
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||||||||||||||||||| || | ||  || || ||||| ||||||| | ||||||  ||||||||||||| ||| |||| ||||    
T  11183597 ttttcagcttatttccataagctctccagggtagcttgtgaaaacagcttatagctaatatgaggacagtttgactttgttttatctgttgt 11183506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 41620309 - 41620400
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||| |||||||| || |||||| ||| ||||  ||||  ||||| ||| |||| |||||||||| | ||||||||||||| |||||||||    
T  41620309 ttttccgcttattttcaaaagctcgacaagatagcttataaaaacagcttttagaatatatgaacataatttgactttattttatcttttgt 41620400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 42215324 - 42215410
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatct 88  Q
    |||||||||||||| |||||||||| || ||||   |||| ||| |  ||||||||||||  || ||||||||||||||||| ||||    
T  42215324 ttttcagcttatttacataagctctccaggatagcatatgaaaataggttatagattatacaaaaacagtttgactttattttatct 42215410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 6864477 - 6864558
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    ||||||||||||||||  ||||||| ||  |||  ||||| ||||||||||||  ||| ||||| | |||||||||||||||    
T  6864477 ttttcagcttatttcctcaagctctccaaaatagcttatgaaaacaacttataacttacatgaaaatagtttgactttattt 6864558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 28769357 - 28769438
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||||||||||||||||||| |||| ||  |||  ||||| ||||| ||||||| ||||| ||| | |||||||||| ||||    
T  28769357 ttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttatagcttataagaaaatagtttgacttaattt 28769438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 35298494 - 35298587
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattata-tgaacacagtttgactttatttcatcttttgt 93  Q
    |||||||||||||||   || ||||  |||||||  ||||| ||||||||||||| ||||| |||| || ||||| |||||||| |||||||||    
T  35298494 attttcagcttatttatgtaggctcaccatgatagcttatgaaaacaacttatagtttatattgaaaactgtttggctttattttatcttttgt 35298587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 38561743 - 38561678
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||| |||||||||||||  || || || | ||||||||||||||| ||||||||| ||||||||    
T  38561743 ttatgaaaacaacttatagtatagataaaaatagtttgactttattttatcttttgttatataaat 38561678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 9956832 - 9956884
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttata 54  Q
    |||||||||||||| |||||| ||| || |||| |||||| ||||||||||||    
T  9956832 ttttcagcttattttcataagttctccaagatagattatgaaaacaacttata 9956884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 34788493 - 34788545
Alignment:
Q  50 ttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    |||||| ||||||| | ||||||||||||||||| |||||| |||||| ||||    
T  34788493 ttatagcttatatggaaacagtttgactttattttatctttggtcataaaaat 34788545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 39881770 - 39881802
Alignment:
Q  2 ttttcagcttatttccataagctctacatgata 34  Q
    ||||||||||||||||||||||||| |||||||    
T  39881770 ttttcagcttatttccataagctctccatgata 39881802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 37588378 - 37588467
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    ||||||||||||||||||||||||| ||  |||| ||||| ||||||||||||| ||||||||| ||  ||||| || |||| |||||||    
T  37588378 ttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaaactttttgatttgattttatctttt 37588467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 42181109 - 42181210
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataa 100  Q
    ||||||||||||||||| | ||||||  | ||||| || |||||||||||||||| ||||||||| ||  ||||||||| ||| ||||||||| ||| ||    
T  42181109 attttcagcttatttccttgagctctctaggataacttgtgcaaacaacttatagcttatatgaaaaccatttgactttgttttatcttttgttataaaa 42181208  T
Q  101 at 102  Q
    ||    
T  42181209 at 42181210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 14295558 - 14295458
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    ||||||||||| ||| | ||||||| || ||||  ||| | ||||| ||||||| ||||||||| ||||||||||||||||| ||||||||| ||| |||    
T  14295558 ttttcagcttacttctaaaagctctccaggatagcttacgaaaacagcttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaa 14295459  T
Q  102 t 102  Q
    |    
T  14295458 t 14295458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 29054952 - 29054897
Alignment:
Q  10 ttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaa 65  Q
    |||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||    
T  29054952 ttatttccataagctctacatgatagtttatggaaacaacttatagcttatatgaa 29054897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 36539798 - 36539708
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    ||||||| ||||| ||| ||||||| ||  |||| ||||  ||||||||||||| ||||||||| |||| |||||||||||| ||||||||    
T  36539798 ttttcagtttattaccaaaagctcttcagaataacttataaaaacaacttatagcttatatgaaaacaggttgactttattttatcttttg 36539708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 37690654 - 37690744
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataa-attatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    ||||||||||||||||||||||||| ||| ||||  ||||| ||||||||||||| ||||||||| ||  ||||| || |||| |||||||    
T  37690654 ttttcagcttatttccataagctctccataataactttatgaaaacaacttatagcttatatgaaaactttttgatttgattttatctttt 37690744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 17368728 - 17368647
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||||||||||||||||||| |||| || ||||  ||||| ||||||||||||||||| |  || |||||||||||| ||||    
T  17368728 ttttcagcttatttccataacctctccaagatagcttatgaaaacaacttatagattacacaaaaacagtttgacttcattt 17368647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 37526217 - 37526306
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    ||||||||||||||||||||||||| ||  | || ||||| ||||||||||||| ||||||||| ||  ||||| || |||| |||||||    
T  37526217 ttttcagcttatttccataagctctccagaacaacttatgaaaacaacttatagcttatatgaaaactttttgatttgattttatctttt 37526306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 32172706 - 32172614
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    ||||||||||||||||||| || ||| |||||||  ||||| ||||| ||||||| ||||||| | |||  ||||||| |||| |||||||||    
T  32172706 attttcagcttatttccattagttcttcatgatagcttatgaaaacagcttatagcttatatgtaaacaacttgacttcattttatcttttgt 32172614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 41016230 - 41016150
Alignment:
Q  3 tttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    ||||||||||||| |||||||| | ||||||   || || ||||||||||||| ||||||||| ||||||||| |||||||    
T  41016230 tttcagcttattttcataagctttccatgatggcttgtgaaaacaacttatagcttatatgaaaacagtttgaatttattt 41016150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 28586784 - 28586891
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    ||||||||||||||| |||||||||  | ||||  |  |  ||||| ||||||  ||||||||| ||||||||||||||||| ||||||||| ||| |||    
T  28586784 ttttcagcttatttcgataagctctctaggatagctcgtcaaaacagcttataatttatatgaaaacagtttgactttattttatcttttgttatagaaa 28586883  T
Q  102 tggtgtat 109  Q
    | ||||||    
T  28586884 tagtgtat 28586891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 26390808 - 26390897
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    |||||| |||||||||||||||||| || ||||| ||| | || || ||||||| ||||||||| ||||||| || |||||| ||||||||    
T  26390808 ttttcaccttatttccataagctctccaggataacttaggaaaccatcttatagcttatatgaaaacagtttaac-ttattttatcttttg 26390897  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 9106873 - 9106796
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgacttt 79  Q
    |||||||||||||||||||||||   || ||||| ||||| ||| | |||||||||||||  || |||||||||||||    
T  9106873 ttttcagcttatttccataagcttagcaggataacttatgaaaatagcttatagattatacaaaaacagtttgacttt 9106796  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 10272449 - 10272538
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctttt 91  Q
    |||||||||||||| ||||| |||| || |||   ||||| ||||||||||||| ||||| ||| ||| |||||||| |||| |||||||    
T  10272449 ttttcagcttattttcataaactctccaagatggcttatgaaaacaacttatagcttatacgaaaacaatttgacttaattttatctttt 10272538  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 17258901 - 17258982
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||||||||||||| |||||||||| || ||||  ||||| ||||| ||||| |||| || ||| | |||||||||||||||    
T  17258901 ttttcagcttattttcataagctcttcaggatagtttatgaaaacagcttattgattgtacgaaaatagtttgactttattt 17258982  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 18543215 - 18543315
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacac-agtttgactttatttcatcttttgtcatataa 100  Q
    ||||||||||||||| ||||||||| || ||||  ||||| ||||||||||||  |||||| || || ||||||||||||||| || |||||| ||| ||    
T  18543215 ttttcagcttatttc-ataagctctccaggatagcttatgaaaacaacttatatcttatataaaaacaagtttgactttatttaatattttgtgatacaa 18543313  T
Q  101 at 102  Q
    ||    
T  18543314 at 18543315  T

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Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 39823174 - 39823239
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||| ||||||||| ||| |||||||||   ||||||||||||||| ||||||||| ||||||||    
T  39823174 ttatgaaaacaacttgtagcttatatgaaagtagtttgactttattttatcttttgttatataaat 39823239  T

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Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 18704054 - 18704153
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    ||||||||||||||||||||| |||   | |||  ||||| ||||||||||||| |||||| || | || |||||||||||| ||||||||| ||| |||    
T  18704054 ttttcagcttatttccataagatctttgtaatagcttatgaaaacaacttatagcttatataaaaatagcttgactttattt-atcttttgttatagaaa 18704152  T

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Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 19177532 - 19177444
Alignment:
Q  2 ttttcagcttatttccataagctcta-catgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    |||||| | ||||||||||||||||  ||||| || ||| | ||||||||||||| ||||||||| |||||| ||||| |||| |||||    
T  19177532 ttttcaacatatttccataagctctttcatgagaacttacgaaaacaacttatagcttatatgaaaacagttagacttaattttatctt 19177444  T

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Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 32059642 - 32059694
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    ||||| ||||| ||||||| ||||||||| ||||||||||||||||| |||||    
T  32059642 ttatgaaaacagcttatagcttatatgaaaacagtttgactttattttatctt 32059694  T

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Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 11104970 - 11104899
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagttt 73  Q
    |||||||||||||||||||||||||    ||||| ||||| ||| | |||||||||||||  ||||||||||    
T  11104970 ttttcagcttatttccataagctcttgcagataacttatgaaaatagcttatagattatacaaacacagttt 11104899  T

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Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 15003540 - 15003623
Alignment:
Q  10 ttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgt 93  Q
    |||||||||||||||||    ||||  ||||| |||| |||||||| ||||||||| | ||||||| ||||||| |||||||||    
T  15003540 ttatttccataagctctcttggatagcttatgaaaaccacttatagcttatatgaagagagtttgattttattttatcttttgt 15003623  T

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Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 35135725 - 35135780
Alignment:
Q  47 aacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaat 102  Q
    ||||||||| ||||||||| | ||||||||||||||| ||||||||| ||| ||||    
T  35135725 aacttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaat 35135780  T

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Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 583836 - 583878
Alignment:
Q  47 aacttatagattatatgaacacagtttgactttatttcatctt 89  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||    
T  583836 aacttatagcttatatgaaaacagtttgactttattttatctt 583878  T

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Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 19138735 - 19138816
Alignment:
Q  2 ttttcagcttatttccataagctct--acatgataaattatgcaaacaacttatagattatatgaacacagtttgactttat 81  Q
    |||||||||||||||||||||||||  | || |||  ||||| ||||||||||||| |||| |||| ||| ||||| |||||    
T  19138735 ttttcagcttatttccataagctctccatataatagcttatgaaaacaacttatagcttatctgaaaacaatttgaatttat 19138816  T

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Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 31030147 - 31030229
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||||||||||||||||||||||||| || || |  ||| | |||| |||||||| ||||||||  |||  ||||||||||||    
T  31030147 attttcagcttatttccataagctctccaggacagcttaggaaaactacttatagcttatatgataacaacttgactttattt 31030229  T

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Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 15074767 - 15074820
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatag 55  Q
    ||||||||||||||||||||||| | ||  |||| ||||| |||||||||||||    
T  15074767 ttttcagcttatttccataagctttccagtataacttatgaaaacaacttatag 15074820  T

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Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 41017776 - 41017698
Alignment:
Q  3 tttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttattt 83  Q
    |||||||||||||  ||||||| | |||||| | ||||| ||||||||||||| ||||| ||| |  ||||||||||||||    
T  41017776 tttcagcttattt--ataagctttccatgatgacttatgaaaacaacttatagcttataggaaaatggtttgactttattt 41017698  T

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Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 41277403 - 41277456
Alignment:
Q  37 ttatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttt 90  Q
    ||||| ||||||||| ||  ||||||||| ||||||||||||||||| ||||||    
T  41277403 ttatgaaaacaacttttaacttatatgaaaacagtttgactttattttatcttt 41277456  T

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Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2568711 - 2568651
Alignment:
Q  1 attttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattata 61  Q
    ||||| ||||||||| ||| |||||| |||||||  ||||| ||||||||||||| |||||    
T  2568711 atttttagcttattttcattagctctccatgatagcttatgaaaacaacttatagcttata 2568651  T

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Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 8985713 - 8985633
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatt 82  Q
    |||||||||| ||||||||||||||| | ||||  ||||| ||| | |||  | |||||||||| | ||||||||||||||    
T  8985713 ttttcagcttctttccataagctctataggatagcttatgaaaatagcttgcaaattatatgaaaatagtttgactttatt 8985633  T

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Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 42583201 - 42583101
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    |||||||||||  | |||||| ||| || ||||||||||| ||||| |||||   ||| | ||| ||| ||| ||||||||||||||||||| ||| |||    
T  42583201 ttttcagcttacattcataagttctccacgataaattatgaaaacagcttatcccttacacgaaaacaatttaactttatttcatcttttgttatagaaa 42583102  T
Q  102 t 102  Q
    |    
T  42583101 t 42583101  T

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Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 27628 - 27528
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttgtcatataaa 101  Q
    ||||||||||||||||| | |||   || ||||  ||||| ||||||||||||| ||||||||| ||| ||||||||||||| ||||| ||| ||| |||    
T  27628 ttttcagcttatttccacacgcttaccaagatagtttatgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaaa 27529  T
Q  102 t 102  Q
    |    
T  27528 t 27528  T

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Target: scaffold0053 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 20210 - 20143
Alignment:
Q  23 ctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttt 90  Q
    |||||||| |||| ||||| |||||||| |||| ||||||||  || |||||||||||||| ||||||    
T  20210 ctctacataataacttatgaaaacaactaatagcttatatgataactgtttgactttattttatcttt 20143  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 159991 - 160080
Alignment:
Q  2 ttttcagcttatttccataagctctacatgataaattatgcaaacaacttatagattatatgaacacagtttgactttatttcatcttttg 92  Q
    ||||||||||||||||| |||||||  | ||||  ||||| ||||| ||||||  ||||||| |  |||||||||||||||| ||||||||    
T  159991 ttttcagcttatttccacaagctctttaggatagcttatgaaaacatcttataacttatatg-attcagtttgactttattttatcttttg 160080  T

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