View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6698_low_81 (Length: 242)
Name: NF6698_low_81
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_81 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2096893 - 2096675
Alignment:
| Q |
1 |
tcatatgatatttcaagataattgaacttcttagatggccaagtatgttggttaagttcaacactgatttccttgataagctacattcatttaaagctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2096893 |
tcatatgatatttcaagataattgaacttcttagatggccaagtatgttggttaagttcaacaccgatttccttgataagctgcattcatttaaagctct |
2096794 |
T |
|
| Q |
101 |
ttttgtcatttgcagggacagaagtatatacatat--atgcatacatacatttaatcaaaactctagtaatctaaatcaacaaatttgtttcaatcttaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2096793 |
atttgtcatttgcagggacagaagtatatacatatacatgcatacatacatttaatcaaaactctagtaatccaaatcaacaaatttgtttcaatcttaa |
2096694 |
T |
|
| Q |
199 |
aatcagtaactagagtagg |
217 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
2096693 |
aatcagtaactatagtagg |
2096675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 2092816 - 2092747
Alignment:
| Q |
18 |
ataattgaacttcttagatggccaagtatgttggttaagttcaacactgatttccttgataagctacatt |
87 |
Q |
| |
|
|||||||||| |||| | |||||||||||||||||||||||||||| || ||||||| | ||||| |||| |
|
|
| T |
2092816 |
ataattgaacctctttgctggccaagtatgttggttaagttcaacattggtttccttaacaagctgcatt |
2092747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 1562335 - 1562288
Alignment:
| Q |
40 |
caagtatgttggttaagttcaacactgatttccttgataagctacatt |
87 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
1562335 |
caagtatgttggttaagttcaacattggtttccttgataagctgcatt |
1562288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University