View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_83 (Length: 241)
Name: NF6698_low_83
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_83 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 48711749 - 48711542
Alignment:
| Q |
21 |
tttccggttcgtcttcaaccccaaaatgacaaaattgtatcccaattgttgttgaaactgcaaaatcgttttcctctgttgttgaaaccgtaaatcgcaa |
120 |
Q |
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| T |
48711749 |
tttccagttcgtcttcaacccaaaaatcacaaaattgtatcccaattgttgttgaaactgcaaaatcgttttcctctgttgttgaaaccgtaaatcgcaa |
48711650 |
T |
|
| Q |
121 |
atcttgtttcagttctgcttcattcttgtactgaaactgcaaaattgatttcctctttcgtttcccttgtcgtgtaaggtgtaatcatgttctattagtg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48711649 |
atcttgtttcagttctgcttcattcttgtactgaaactgcaaaattgatttcctctttcgtttctcttgtcgtgtaaggtgtaatcatgttctattagtg |
48711550 |
T |
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| Q |
221 |
tactgaac |
228 |
Q |
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|||||||| |
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| T |
48711549 |
tactgaac |
48711542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 48294724 - 48294620
Alignment:
| Q |
19 |
cttttccggttcgtcttcaaccccaaaatgacaaaattgtatcccaattgttgttgaaactgcaaaatcgttttcctctgttgttgaaaccgtaaatcgc |
118 |
Q |
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||||||| |||| ||||||||| |||||| ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
48294724 |
cttttccagttcttcttcaacctcaaaatcacaaaatcgtgtcccaattgttgttgaaactgtaaaatcgttttcctctgttgttgaagccgtaaatcgc |
48294625 |
T |
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| Q |
119 |
aaatc |
123 |
Q |
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|||| |
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| T |
48294624 |
gaatc |
48294620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 4623610 - 4623671
Alignment:
| Q |
97 |
tgttgttgaaaccgtaaatcgcaaatcttgtttcagttctgcttcattcttgtactgaaact |
158 |
Q |
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| T |
4623610 |
tgttgttgaaaccgtaaaccgcgaatcatgttccagttctgcttgattcgtgtactgaaact |
4623671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 4623562 - 4623621
Alignment:
| Q |
19 |
cttttccggttcgtcttcaaccccaaaatgacaaaattgtatcccaattgttgttgaaac |
78 |
Q |
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||||||| |||| ||||||||| |||||| ||||||| || ||||||||||||||||||| |
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| T |
4623562 |
cttttccagttcttcttcaacctcaaaatcacaaaatcgtgtcccaattgttgttgaaac |
4623621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 29616883 - 29616780
Alignment:
| Q |
82 |
aaaatcgttttcctctgttgttgaaaccgtaaatcgcaaatcttgtttcagttctgcttcattcttgtactgaaactgcaaaattgatttcctctttcgt |
181 |
Q |
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||||||| ||||||| ||||||||||| ||||||| | | |||| |||||| ||||||| |||||||||| ||||||| |||||||||||||| |
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| T |
29616883 |
aaaatcgcattcctctattgttgaaacccgaaatcgcgagttgtgttctagttcttcttcattagtgtactgaaatcgcaaaatcaatttcctctttcgt |
29616784 |
T |
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| Q |
182 |
ttcc |
185 |
Q |
| |
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|||| |
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| T |
29616783 |
ttcc |
29616780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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