View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_87 (Length: 240)
Name: NF6698_low_87
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_87 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 514227 - 514461
Alignment:
| Q |
1 |
aaaaaaggagtgattgatgtctatgagatccaattaagtattcaaatataccgagagctctagtgtgaatgtt--aagtcttataattttaaattgaatt |
98 |
Q |
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| T |
514227 |
aaaaaaggagtgatggatgtctatgagatccaattaagtattcaaatataccgagagctctagtgtgaatgttttaagtcttataattttaaattgaatt |
514326 |
T |
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| Q |
99 |
taaatgaaatgcaatgtcgattggcgtaatagttttacaccgccatcaatcaaaatctagtgttttgccacaccacctcactcttgcaaaggtataacat |
198 |
Q |
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| T |
514327 |
taaatgaaatgcaatatcgattggtgtaaaagttttacaccgtcatcaatcaaaatctagtgttttgccacaccatgtcactcttgcaaaggtatagcat |
514426 |
T |
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| Q |
199 |
ttcatgaactgtcatctaattatatatataacatt |
233 |
Q |
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| T |
514427 |
ttcatgaactgtcatctaattatagatatagcatt |
514461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 563069 - 562976
Alignment:
| Q |
1 |
aaaaaaggagtgattgatgtctatgagatccaatta---agtattcaaatataccgagagctctagtgtgaatgt--taagtcttataatttta |
89 |
Q |
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| T |
563069 |
aaaaaaagagtgatggatgtctatgagatccaattaagtagtatttaaatatacagagaactctactgtgaatgttgtaagtcttataatttta |
562976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 562980 - 562919
Alignment:
| Q |
131 |
ttttacaccgccatcaatcaaaatctagtgttttgccacaccacctcactcttgcaaaggta |
192 |
Q |
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| T |
562980 |
ttttacacccacatcaattaaaatctactgttttgccatatcacctcactcttgcaaaggta |
562919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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