View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_low_88 (Length: 239)

Name: NF6698_low_88
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_low_88
NF6698_low_88
[»] scaffold0038 (5 HSPs)
scaffold0038 (4-238)||(43456-43690)
scaffold0038 (21-202)||(27986-28166)
scaffold0038 (60-199)||(117331-117470)
scaffold0038 (8-202)||(35264-35456)
scaffold0038 (203-238)||(27930-27965)
[»] chr6 (14 HSPs)
chr6 (4-238)||(28243294-28243528)
chr6 (8-202)||(28297193-28297387)
chr6 (8-202)||(28514686-28514880)
chr6 (8-189)||(28181665-28181846)
chr6 (21-199)||(28326016-28326194)
chr6 (40-202)||(28185928-28186090)
chr6 (21-202)||(28227488-28227668)
chr6 (8-202)||(28235102-28235294)
chr6 (71-161)||(26623847-26623937)
chr6 (71-161)||(26729824-26729914)
chr6 (142-194)||(28150442-28150494)
chr6 (203-238)||(28185872-28185907)
chr6 (203-238)||(28227432-28227467)
chr6 (142-194)||(28098030-28098082)
[»] scaffold0019 (2 HSPs)
scaffold0019 (8-200)||(57747-57940)
scaffold0019 (203-238)||(57963-57998)
[»] chr4 (2 HSPs)
chr4 (71-202)||(5090469-5090600)
chr4 (103-161)||(18731048-18731106)


Alignment Details
Target: scaffold0038 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 238
Target Start/End: Complemental strand, 43690 - 43456
Alignment:
Q  4 catatgaactaccccagtagatccgacatcaagaaatgaatttacttttaggaccttagactcgagaccaacagggtaattagcaacatatagaggaaca 103  Q
    |||||||||||| ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  43690 catatgaactacaccagtagatccgacatcaagaaatttatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatatagaggaaca 43591  T
Q  104 cgattgatcttgctggataaatattttactatcttgtcaataaactcgtattcatatccatccctacccaatcaaataagtttgagtaaatgcatcacat 203  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  43590 cgattgattttgctggataaatattttactatcttctcaataaactcgtattcatatccattcctacccaatcaaataagtttgagtaaatgcatcatat 43491  T
Q  204 attgataatagttgtataaatacaattcaaatatt 238  Q
    |||||||||||||||||||||||||||||||||||    
T  43490 attgataatagttgtataaatacaattcaaatatt 43456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 28166 - 27986
Alignment:
Q  21 tagatccgacatcaagaaatgaatttacttttaggaccttagactcgagaccaacagggtaattagcaacatatagaggaacacgattgatcttgctgga 120  Q
    ||||||| ||||| | || ||||||||||||||||||| |||| || | ||||||||||||||  ||||||| || ||||||| ||||||||||| | ||    
T  28166 tagatccaacatccataagtgaatttacttttaggaccctagattcaacaccaacagggtaatcggcaacatgtaaaggaacatgattgatcttgttaga 28067  T
Q  121 taaatattttactatcttgtcaataaactcgtattcatatccatccctacccaatcaaataagtttgagtaaatgcatcaca 202  Q
    || |||||| |||||||| || ||||||||| ||||||| |||| ||||||||||||||||| |||||||||||||||||||    
T  28066 tatatatttgactatcttctcgataaactcgcattcatagccattcctacccaatcaaataa-tttgagtaaatgcatcaca 27986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 117470 - 117331
Alignment:
Q  60 tagactcgagaccaacagggtaattagcaacatatagaggaacacgattgatcttgctggataaatattttactatcttgtcaataaactcgtattcata 159  Q
    ||||||||||||| ||||||||||  |||||||||| |||||||| | ||||||| ||| |||  ||||| |||||||| ||||||||||||||||||||    
T  117470 tagactcgagacctacagggtaatccgcaacatataaaggaacacaactgatcttcctgaatacgtatttgactatcttctcaataaactcgtattcata 117371  T
Q  160 tccatccctacccaatcaaataagtttgagtaaatgcatc 199  Q
     |||| ||||||||||||||||||||||||||||||||||    
T  117370 gccattcctacccaatcaaataagtttgagtaaatgcatc 117331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 35456 - 35264
Alignment:
Q  8 tgaactaccccagtagatccgacatcaagaaatgaatttacttttaggaccttagactcgagaccaacagggtaattagcaacatatagaggaacacgat 107  Q
    |||||| | ||| ||||||| ||||| | | ||||| |||||||||||||| |||||| |||||||||||||||||  |||||||||| ||||||| |||    
T  35456 tgaacttcaccattagatccaacatccacacatgaagttacttttaggaccctagacttgagaccaacagggtaatcggcaacatataaaggaacatgat 35357  T
Q  108 tgatcttgctggataaatattttactatcttgtcaataaactcgtattcatatccatccctacccaatcaaataagtttgagtaaatgcatcaca 202  Q
    |||||||| | |||| |||||| |||||||| | |||| ||| |||||||||||||| ||||| ||  ||||||||| |  || |||||||||||    
T  35356 tgatcttgtttgatacatatttgactatcttcttaatatacttgtattcatatccattcctacaca--caaataagtcttggttaatgcatcaca 35264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 27965 - 27930
Alignment:
Q  203 tattgataatagttgtataaatacaattcaaatatt 238  Q
    |||| |||||||||||||||||||||||||||||||    
T  27965 tattaataatagttgtataaatacaattcaaatatt 27930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 238
Target Start/End: Complemental strand, 28243528 - 28243294
Alignment:
Q  4 catatgaactaccccagtagatccgacatcaagaaatgaatttacttttaggaccttagactcgagaccaacagggtaattagcaacatatagaggaaca 103  Q
    |||||||||||| ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  28243528 catatgaactacaccagtagatccgacatcaagaaatttatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatatagaggaaca 28243429  T
Q  104 cgattgatcttgctggataaatattttactatcttgtcaataaactcgtattcatatccatccctacccaatcaaataagtttgagtaaatgcatcacat 203  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  28243428 cgattgattttgctggataaatattttactatcttctcaataaactcgtattcatatccattcctacccaatcaaataagtttgagtaaatgcatcatat 28243329  T
Q  204 attgataatagttgtataaatacaattcaaatatt 238  Q
    |||||||||||||||||||||||||||||||||||    
T  28243328 attgataatagttgtataaatacaattcaaatatt 28243294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 28297193 - 28297387
Alignment:
Q  8 tgaactaccccagtagatccgacatcaagaaatgaatttacttttaggaccttagactcgagaccaacagggtaattagcaacatatagaggaacacgat 107  Q
    |||||| | ||| |||||| || ||| |||||||||||||||||||||||| |||||| ||||||||| |||||||  |||||||||| |||||||||||    
T  28297193 tgaacttcaccattagatctgagatccagaaatgaatttacttttaggaccctagactggagaccaacggggtaatcggcaacatataaaggaacacgat 28297292  T
Q  108 tgatcttgctggataaatattttactatcttgtcaataaactcgtattcatatccatccctacccaatcaaataagtttgagtaaatgcatcaca 202  Q
    |||||||||||||||  ||||| |||||||| ||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  28297293 tgatcttgctggatacgtatttgactatcttctcaataaactcatattcatatccattcctatccaatcaaataagtttgagtaaatgcatcaca 28297387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 28514880 - 28514686
Alignment:
Q  8 tgaactaccccagtagatccgacatcaagaaatgaatttacttttaggaccttagactcgagaccaacagggtaattagcaacatatagaggaacacgat 107  Q
    |||||| | ||| |||||| || ||| |||||||||||||||||||||||| |||||| ||||||||| |||||||  |||||||||| |||||||||||    
T  28514880 tgaacttcaccattagatctgagatccagaaatgaatttacttttaggaccctagactggagaccaacggggtaatcggcaacatataaaggaacacgat 28514781  T
Q  108 tgatcttgctggataaatattttactatcttgtcaataaactcgtattcatatccatccctacccaatcaaataagtttgagtaaatgcatcaca 202  Q
    |||||||||||||||  ||||| |||||||| ||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  28514780 tgatcttgctggatacgtatttgactatcttctcaataaactcatattcatatccattcctatccaatcaaataagtttgagtaaatgcatcaca 28514686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 28181846 - 28181665
Alignment:
Q  8 tgaactaccccagtagatccgacatcaagaaatgaatttacttttaggaccttagactcgagaccaacagggtaattagcaacatatagaggaacacgat 107  Q
    |||||| | ||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||  |||||  |||||||||| |||||||| ||    
T  28181846 tgaacttcaccattagatccgacatccagaaatgaatttacttttaggaccctagactcgagaccaacatagtaatcggcaacatataaaggaacacaat 28181747  T
Q  108 tgatcttgctggataaatattttactatcttgtcaataaactcgtattcatatccatccctacccaatcaaataagtttgag 189  Q
    |||||||  |||| |  ||||| |||||||| || |||||||| ||||||||||||| ||||||||||||||||||||||||    
T  28181746 tgatctttttggaaacgtatttgactatcttttcgataaactcatattcatatccattcctacccaatcaaataagtttgag 28181665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 28326194 - 28326016
Alignment:
Q  21 tagatccgacatcaagaaatgaatttacttttaggaccttagactcgagaccaacagggtaattagcaacatatagaggaacacgattgatcttgctgga 120  Q
    ||||||| ||||| | || ||||||||||| ||||| | ||||||||||||| ||||||||||  |||||||||| |||||||| | ||||||| ||| |    
T  28326194 tagatccaacatctataagtgaatttacttctaggatcctagactcgagacctacagggtaatccgcaacatataaaggaacacaactgatcttcctgaa 28326095  T
Q  121 taaatattttactatcttgtcaataaactcgtattcatatccatccctacccaatcaaataagtttgagtaaatgcatc 199  Q
    ||  ||||| |||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  28326094 tacgtatttgactatcttctcaataaactcgtattcatagccattcctacccaatcaaataagtttgagtaaatgcatc 28326016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 40 - 202
Target Start/End: Complemental strand, 28186090 - 28185928
Alignment:
Q  40 tgaatttacttttaggaccttagactcgagaccaacagggtaattagcaacatatagaggaacacgattgatcttgctggataaatattttactatcttg 139  Q
    ||||||||||||||| ||| ||||||||| |||||||||| ||| ||||||||||| ||||||| ||||||||||| | |||| |||||| ||||||||     
T  28186090 tgaatttacttttagaaccctagactcgataccaacagggaaatcagcaacatataaaggaacatgattgatcttgttagatacatatttgactatcttc 28185991  T
Q  140 tcaataaactcgtattcatatccatccctacccaatcaaataagtttgagtaaatgcatcaca 202  Q
    ||||||||||||| |||||| |||| |||||||||| |||||||||||| ||| |||||||||    
T  28185990 tcaataaactcgtgttcatagccattcctacccaataaaataagtttgattaagtgcatcaca 28185928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 28227668 - 28227488
Alignment:
Q  21 tagatccgacatcaagaaatgaatttacttttaggaccttagactcgagaccaacagggtaattagcaacatatagaggaacacgattgatcttgctgga 120  Q
    ||||||| ||||| | || ||||||||||||||||||| |||| || | ||||||||||||||  ||||||| || ||||||| ||||||||||| | ||    
T  28227668 tagatccaacatccataagtgaatttacttttaggaccctagattcaacaccaacagggtaatcggcaacatgtaaaggaacatgattgatcttgttaga 28227569  T
Q  121 taaatattttactatcttgtcaataaactcgtattcatatccatccctacccaatcaaataagtttgagtaaatgcatcaca 202  Q
    || |||||| |||||||| || ||||||||| ||||||| |||| ||||||||||||||||| |||||||||||||||||||    
T  28227568 tatatatttgactatcttctcgataaactcgcattcatagccattcctacccaatcaaataa-tttgagtaaatgcatcaca 28227488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 28235294 - 28235102
Alignment:
Q  8 tgaactaccccagtagatccgacatcaagaaatgaatttacttttaggaccttagactcgagaccaacagggtaattagcaacatatagaggaacacgat 107  Q
    |||||| | ||| ||||||| ||||| | | ||||| |||||||||||||| |||||| |||||||||||||||||  |||||||||| ||||||| |||    
T  28235294 tgaacttcaccattagatccaacatccacacatgaagttacttttaggaccctagacttgagaccaacagggtaatcggcaacatataaaggaacatgat 28235195  T
Q  108 tgatcttgctggataaatattttactatcttgtcaataaactcgtattcatatccatccctacccaatcaaataagtttgagtaaatgcatcaca 202  Q
    |||||||| | |||| |||||| |||||||| | |||| ||| |||||||||||||| ||||| ||  ||||||||| |  || |||||||||||    
T  28235194 tgatcttgtttgatacatatttgactatcttcttaatatacttgtattcatatccattcctacaca--caaataagtcttggttaatgcatcaca 28235102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 161
Target Start/End: Complemental strand, 26623937 - 26623847
Alignment:
Q  71 ccaacagggtaattagcaacatatagaggaacacgattgatcttgctggataaatattttactatcttgtcaataaactcgtattcatatc 161  Q
    ||||||||||| |||||||||| ||  || ||||||||||||||| |||| |  ||||| |||||||| |||||||| || ||||||||||    
T  26623937 ccaacagggtatttagcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatcttttcaataaaatcatattcatatc 26623847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 161
Target Start/End: Complemental strand, 26729914 - 26729824
Alignment:
Q  71 ccaacagggtaattagcaacatatagaggaacacgattgatcttgctggataaatattttactatcttgtcaataaactcgtattcatatc 161  Q
    ||||||||||| |||||||||| ||  || ||||||||||||||| |||| |  ||||| |||||||| |||||||| || ||||||||||    
T  26729914 ccaacagggtatttagcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatcttttcaataaaatcatattcatatc 26729824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 28150494 - 28150442
Alignment:
Q  142 aataaactcgtattcatatccatccctacccaatcaaataagtttgagtaaat 194  Q
    |||||||||| |||||||||||| ||| |||||| | ||||||||||||||||    
T  28150494 aataaactcgaattcatatccattcctgcccaataagataagtttgagtaaat 28150442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 28185907 - 28185872
Alignment:
Q  203 tattgataatagttgtataaatacaattcaaatatt 238  Q
    |||| |||||||||||||||||||||||||||||||    
T  28185907 tattaataatagttgtataaatacaattcaaatatt 28185872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 28227467 - 28227432
Alignment:
Q  203 tattgataatagttgtataaatacaattcaaatatt 238  Q
    |||| |||||||||||||||||||||||||||||||    
T  28227467 tattaataatagttgtataaatacaattcaaatatt 28227432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 28098030 - 28098082
Alignment:
Q  142 aataaactcgtattcatatccatccctacccaatcaaataagtttgagtaaat 194  Q
    |||||||||| |||||||||||| |||  ||||| | ||||||||||||||||    
T  28098030 aataaactcgaattcatatccattcctggccaataagataagtttgagtaaat 28098082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 57747 - 57940
Alignment:
Q  8 tgaactaccccagtagatccgacatcaagaaatgaatttacttttaggaccttagactcgagaccaacagggtaattagcaacatatagaggaacacgat 107  Q
    |||||| | ||| ||||||  ||||| |||| ||||||||||||||||||| |||| |||| ||||||||||||||  |||||||||| ||||||| |||    
T  57747 tgaacttcaccattagatctaacatccagaagtgaatttacttttaggaccctagattcgataccaacagggtaatcggcaacatataaaggaacatgat 57846  T
Q  108 tgatcttgctggataaatattttactatcttgtcaataaactcgtattcatatccatccctaccc-aatcaaataagtttgagtaaatgcatca 200  Q
    |||||||| | |||| |||||| |||||||| |||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  57847 tgatcttgttagatacatatttgactatcttctcaataaactcgcattcatatccattcctacccaaatgaaataagtttgagtaaatgcatca 57940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 57963 - 57998
Alignment:
Q  203 tattgataatagttgtataaatacaattcaaatatt 238  Q
    |||| |||||||||||||||||||||||||||||||    
T  57963 tattaataatagttgtataaatacaattcaaatatt 57998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 5090469 - 5090600
Alignment:
Q  71 ccaacagggtaattagcaacatatagaggaacacgattgatcttgctggataaatattttactatcttgtcaataaactcgtattcatatccatccctac 170  Q
    ||||| ||||||| |||||||| || ||||    ||||||||||| |||| | |||| | |||||| | | ||||||||||||||||||||||  ||||     
T  5090469 ccaaccgggtaatcagcaacatgtaaaggagtgtgattgatcttgttggagacatatgtgactatcatctgaataaactcgtattcatatccagtcctat 5090568  T
Q  171 ccaatcaaataagtttgagtaaatgcatcaca 202  Q
    | ||||| |||| ||||| |||||||||||||    
T  5090569 caaatcagataaatttgaataaatgcatcaca 5090600  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 18731048 - 18731106
Alignment:
Q  103 acgattgatcttgctggataaatattttactatcttgtcaataaactcgtattcatatc 161  Q
    |||| |||||||| |||| | |||||| |||||||| |||||||||| |||||||||||    
T  18731048 acgactgatcttgttggagacatatttgactatcttttcaataaacttgtattcatatc 18731106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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