View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_9 (Length: 658)
Name: NF6698_low_9
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 49057398 - 49057902
Alignment:
| Q |
18 |
aactaatgaatagatgctaaaggaaatctaaacctgatcaccaagtaaggatgagtttgaatcaatataaaaacttaataaacaatacatgcatcgtaac |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49057398 |
aactaatgaatagatgctaaaggaaatctaaacctgatcaccaagtaaggatgagtttgaatcaatataaaaacttaataaacaatacatgcatcgtaac |
49057497 |
T |
|
| Q |
118 |
tgataaatagatgttaaaggaaatttctacctgatcaccagcatttggacaatcagtgtcgatgaggataggcctgcagtgcttatccacattcatcaag |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49057498 |
tgataaatagatgttaaaggaaatttctacctgatcaccagcatttggaccatcagtgtcgatgaggataggcctgcagtgcttatccacattcatcaag |
49057597 |
T |
|
| Q |
218 |
cttgaatgctggaaatgattaacaagagctgttttcccttgtatgcgagcatatgcaggtgacgccactttctcactgttgaatttctcccattttttct |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49057598 |
cttgaatgctggaaatgattaacaagagctgttttcccttgtatgcgagcatatgcaagtgacgccactttctcactgttgaatttctcccattttttcc |
49057697 |
T |
|
| Q |
318 |
cattgaacgcctgcaaaattgaatcgctggatttagtctatcaatacagggtgcatgtgtgatgcatgcgattaattttagccacgcaaaattatcattt |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
49057698 |
cattgaacgcctgcaaaattgaatcgctggatttagtctatcaatacagggtgcatgtgtgatgcatgcaattaattttagccacacaaaattatcattt |
49057797 |
T |
|
| Q |
418 |
tcggcagctaacctcatagaaaggtataatcaagctaggactagtcatgttgatgaatgcatatccaacattgcatttgttctgcaatcaatgttgattc |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49057798 |
tcggcagctaacctcatagaaaggtataatcaagctaggactagtcatgttgatgaatgcatatccagcattgcatttgttctgcaatcaatgttgattc |
49057897 |
T |
|
| Q |
518 |
aatgt |
522 |
Q |
| |
|
||||| |
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|
| T |
49057898 |
aatgt |
49057902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 62 - 522
Target Start/End: Complemental strand, 6555113 - 6554651
Alignment:
| Q |
62 |
gtaaggatgagtttgaatcaatataaaaacttaataaacaatacatgcatcgtaactgataaatagatgttaaaggaaatttctacctgatcaccagcat |
161 |
Q |
| |
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|||||||||||||||| | ||||||||||| ||||||| ||| | |||| |||||| |||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
6555113 |
gtaaggatgagtttgactaaatataaaaacctaataaagaatgcctgcagcgtaaccgataaatagatgttaaagaaaatttatacctgatcaccagcat |
6555014 |
T |
|
| Q |
162 |
ttggacaatcagtgtcgatgaggataggcctgcagtgcttatccacattcatcaagcttgaatgctggaaatgattaacaagagctgttttcccttgtat |
261 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| |||||| ||| ||| || |||| ||| |||||||| |
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| T |
6555013 |
ttggaccatcagtgtcgatgaggataggcctgcagcgcttatcctcattcattaagcttgaattctggaagtgagcaacgagggctgcttttccttgtat |
6554914 |
T |
|
| Q |
262 |
gcgagcatatgcaggtgacgccactttctcactgttgaatttctcccattttttctcattgaacgcctgcaa-aattgaatcgctggatttagtctatca |
360 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| ||||||||||||||||| ||| | ||||| ||||||| ||||| ||| | || ||||||| ||| |
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|
| T |
6554913 |
gcgagcatatgcgagtgatgccactttctcactattgaatttctcccatttcttcccgttgaaaccctgcaagaattgcatcacaggctttagtccatcg |
6554814 |
T |
|
| Q |
361 |
atacaggg--tgcatgtgtgatgcatgcgattaattttagccacgcaa-aattatcattttcggcagctaacctcatagaaaggtataatcaagctagga |
457 |
Q |
| |
|
||||| || || ||| ||||| ||| ||||||||||||| ||||| |||||||||||| | ||||||| |||||| |||| ||||||||| ||| |
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| T |
6554813 |
atacatggcatgtgtgtctgatgtatgtgattaattttagc--cgcaatcattatcattttctgagtctaacctgatagaatggtacaatcaagctggga |
6554716 |
T |
|
| Q |
458 |
ctagtcatgttgatgaatgcatatccaacattgcatttgttctgcaatcaatgttgattcaatgt |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
6554715 |
ctagtcatgttgatgaatgcatatccaacattgcatttgttctgcaatcaatgttgattccatgt |
6554651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 593 - 640
Target Start/End: Original strand, 49057973 - 49058020
Alignment:
| Q |
593 |
cacgtactctgaaatcaattggtagatacacaaagtcataagttcttt |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49057973 |
cacgtactctgaaatcaattggtagatacacaaagtcataagttcttt |
49058020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 634
Target Start/End: Complemental strand, 6554588 - 6554551
Alignment:
| Q |
597 |
tactctgaaatcaattggtagatacacaaagtcataag |
634 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
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| T |
6554588 |
tactctgaaatcaattggtagatacacaaaatcataag |
6554551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 335
Target Start/End: Original strand, 40158061 - 40158189
Alignment:
| Q |
207 |
cattcatcaagcttgaatgctggaaatgattaacaagagctgttttcccttgtatgcgagcatatgcaggtgacgccactttctcactgttgaatttctc |
306 |
Q |
| |
|
||||||||| |||||||| |||||||||| |||||||| | | | ||||| || || ||||||||| |||| || ||||| |||||||| || ||||| |
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| T |
40158061 |
cattcatcaggcttgaattctggaaatgagaaacaagagaagctcttccttgaattcgggcatatgcaagtgatgctactttttcactgttaaacttctc |
40158160 |
T |
|
| Q |
307 |
ccattttttctcattgaacgcctgcaaaa |
335 |
Q |
| |
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|||||| || ||| ||| |||||||||| |
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| T |
40158161 |
ccatttcttaccatggaaagcctgcaaaa |
40158189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 504
Target Start/End: Original strand, 40158350 - 40158384
Alignment:
| Q |
470 |
atgaatgcatatccaacattgcatttgttctgcaa |
504 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |
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| T |
40158350 |
atgaatgcatatccaacattacatttgttctgcaa |
40158384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 45037872 - 45037981
Alignment:
| Q |
207 |
cattcatcaagcttgaatgctggaaatgattaacaagagctgttttcccttgtatgcgagcatatgcaggtgacgccactttctcactgttgaatttctc |
306 |
Q |
| |
|
||||||||| |||||||| |||||||||| || |||||| | ||| ||||| || || ||||||||| || || || || |||||||| || ||||| |
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| T |
45037872 |
cattcatcaggcttgaattctggaaatgagcaataagagcagattttccttgaattcgggcatatgcaagtactgctaccttttcactgttaaacttctc |
45037971 |
T |
|
| Q |
307 |
ccattttttc |
316 |
Q |
| |
|
|||||||||| |
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|
| T |
45037972 |
ccattttttc |
45037981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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