View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6698_low_90 (Length: 235)
Name: NF6698_low_90
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_90 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 45402112 - 45401896
Alignment:
| Q |
1 |
ataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgttgtcttttggtagctagagctgcaatccgaagatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45402112 |
ataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgctgtcttttggtagctagagctgcaatccgaagatt |
45402013 |
T |
|
| Q |
101 |
gatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaatgaatgaa |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45402012 |
gatatcgttgaattcttgatggttggacactggtggttaccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaatgaatgaa |
45401913 |
T |
|
| Q |
201 |
taaagaataacagaatc |
217 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
45401912 |
taacgaataacagaatc |
45401896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 23361699 - 23361480
Alignment:
| Q |
1 |
ataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgttgtcttttggtagctagagctgcaatccgaagatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23361699 |
ataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgctgtcttttggtagctagagctgcaatctgaagatc |
23361600 |
T |
|
| Q |
101 |
gatatcgttgaattgttgatggttggaca---ctggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaatgaat |
197 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23361599 |
gatatcgttgaattattgatggttggacactgctggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaatgaat |
23361500 |
T |
|
| Q |
198 |
gaataaagaataacagaatc |
217 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
23361499 |
gaataacgaataacagaatc |
23361480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 19611260 - 19611045
Alignment:
| Q |
1 |
ataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgttgtcttttggtagctagagctgcaatccgaagatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19611260 |
ataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgctgtcttttgatagctagagctgcaatccgaagatc |
19611161 |
T |
|
| Q |
101 |
gatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaatgaatgaa |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19611160 |
gatatcgttgaattgttgat-gttggacattggcggttgccgaaatcgatgattgttaagcttcagctaaagcagaagcatgaacaaatgaatgaatgaa |
19611062 |
T |
|
| Q |
201 |
taaagaataacagaatc |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
19611061 |
taaagaataacagaatc |
19611045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 7600014 - 7599804
Alignment:
| Q |
1 |
ataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgttgtcttttggtagctagagctgcaatccgaagatc |
100 |
Q |
| |
|
||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
7600014 |
ataataccttggaagaaaaaacttcactgtcaaatttcacaataatacaacg--ggaaacaatgctgccttttggtagctagagctgcaatccgaagatc |
7599917 |
T |
|
| Q |
101 |
gatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaatgaatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7599916 |
gatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaat----gaa |
7599821 |
T |
|
| Q |
201 |
taaagaataacagaatc |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7599820 |
taaagaataacagaatc |
7599804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 28462509 - 28462718
Alignment:
| Q |
1 |
ataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgttgtcttttggtagctagagctgcaatccgaagatc |
100 |
Q |
| |
|
||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
28462509 |
ataataccttggaaga-aaaacttcactgtcaaatttcacaataatacaacg--ggaaacaatgctgccttttggtagctagagctgcaatccgaagatc |
28462605 |
T |
|
| Q |
101 |
gatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaatgaatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28462606 |
gatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaaca----aatgaatgaa |
28462701 |
T |
|
| Q |
201 |
taaagaataacagaatc |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
28462702 |
taaagaataacagaatc |
28462718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University