View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_high_14 (Length: 240)
Name: NF6700_high_14
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 33981124 - 33980906
Alignment:
| Q |
2 |
atccgatccaccttgctatcaacgtacaaaatcgtgctttcaaagtatcaaatctatgtaaaactttgtgtttggtcatctatcgaatagtagtatatat |
101 |
Q |
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| T |
33981124 |
atccgatccaccttgctatcaacgtacaaaatcgtgctttcaaagtatcaaatctatgtaaaactttgtgtttggtcatctatcaaatagta---tatat |
33981028 |
T |
|
| Q |
102 |
tttatggactatagcatacgtgattatttaagaattagacgtacttggcatttggtggtttatccaactaacttttgatgcattttcgaaccttcaagtt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33981027 |
tttatggactatagcatacgtgattatttaagaattagacgtacttggcatttggtggtttatccaactaacttttgatgcattttcgaaccttcaagtt |
33980928 |
T |
|
| Q |
202 |
caattcatattgacaaattaac |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
33980927 |
caattcatattgacaaattaac |
33980906 |
T |
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