View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_high_17 (Length: 232)
Name: NF6700_high_17
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 14577116 - 14576892
Alignment:
| Q |
7 |
atggacatcaactttgttttgcattgcttgagctttgcagttctatgacatgtatgagcaagcttataactatcaatttaaaaattactttgtgatgcag |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14577116 |
atggccatcaactttgttttgcattgcttgagctttgcagttctatgacatgtatgagcaaccttataactatcaatttaaaaattactttgtgatgcag |
14577017 |
T |
|
| Q |
107 |
acttactaaatctcatatggaatatggacattcaatcgtgcacttaacaacaannnnnnncctctcattcttcttaaggaaaacattcttcatatattcc |
206 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14577016 |
acttactaaatctcatatggaatatggacactcaatcgtgcacttaacaacaatttttttcctctcattcttcttaaggaaaacattcttcatatattcc |
14576917 |
T |
|
| Q |
207 |
aaaatatattctttcttatatgttt |
231 |
Q |
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||||||||||||||| || |||||| |
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| T |
14576916 |
aaaatatattctttcatagatgttt |
14576892 |
T |
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