View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_high_9 (Length: 247)
Name: NF6700_high_9
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 1711733 - 1711503
Alignment:
| Q |
1 |
agcaaataaagtccaaatccgatataattacatctccaacataataaagttcacagttcctagcacttttgcttgatcatacatgagttagtaaaatcaa |
100 |
Q |
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| T |
1711733 |
agcaaataaagtccaaatccgatataattacatctccaacataataaagttcacagttcctagcacttttgcttgatcatacatgagttagtaaaatcaa |
1711634 |
T |
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| Q |
101 |
atataaacttgagttggtaaatggaaatttattaattaagaatatgtagtggagaaatatatcatatattaattcaattatnnnnnnnngtctccgaaac |
200 |
Q |
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| T |
1711633 |
atataaacttgagttggtaaatggaaatttattaattaagaatatgtagtggagaaatatatcatatattaattcaattat-taaaaaagtctccaaaac |
1711535 |
T |
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| Q |
201 |
agataacataattaattgtctcactctgatgt |
232 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1711534 |
ggataacataattaattgtctcactctgatgt |
1711503 |
T |
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