View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_low_10 (Length: 364)
Name: NF6700_low_10
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 346
Target Start/End: Complemental strand, 25742217 - 25741885
Alignment:
| Q |
14 |
acatcactaacactcattttctccttcattttcaccataaccaccgtcaacagcctcggcaccgccaccactaccgccatcatccacaacacctccacca |
113 |
Q |
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| T |
25742217 |
acatcactaacactcattttctccttcattttcaccataaccaccgtcaacagcctcggcaccgccaccactaccgccatcatccacaacacctccacca |
25742118 |
T |
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| Q |
114 |
tctgcggcatagtcgccggtaagccctaccaatacatccaatgctaccaaaacaaaaaactcattccaccaatacgccccaacgtttcatttcagtccat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25742117 |
tctgcggcatagtcgccggtaagccctaccaatacatccaatgctaccaaaacaaaaaactcattccaccaatactccccaacgtttcatttcagtccat |
25742018 |
T |
|
| Q |
214 |
atccggtggccggagcttcttctgcggcctccggtctaatggactcagcctacactgttggaacacaaggacacggaagtcttttctcaaacctaaaagg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25742017 |
atccggtggccggagcttcttctgcggcctccggtctaatggactcagcctacactgttggaacacaaggacacggaagtcttttctcaaacctaaaagg |
25741918 |
T |
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| Q |
314 |
gtgtatcatagtgaaaatgttgagttgagtgat |
346 |
Q |
| |
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||||||||||||||||||||| |||||| |||| |
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| T |
25741917 |
gtgtatcatagtgaaaatgttcagttgaatgat |
25741885 |
T |
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