View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_low_13 (Length: 326)
Name: NF6700_low_13
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 2747147 - 2747256
Alignment:
| Q |
20 |
atctgactcgaaggattaacctctacacattcacacccaaaaaataccaataaaaagtgatttttcacaaaaataatctctaagaaagggtctcttattt |
119 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747147 |
atctgactggaaggattaacctctacacgttcacacccaaaaaataccaataaaaagtgatttttcacaaaaataatctctaagaaagggtctcttattt |
2747246 |
T |
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| Q |
120 |
aattcaaaaa |
129 |
Q |
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|||||||||| |
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| T |
2747247 |
aattcaaaaa |
2747256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 218 - 320
Target Start/End: Original strand, 2747333 - 2747435
Alignment:
| Q |
218 |
attcaaatttattttggatacctctttcaagcaccgaataagaacttcactgggatcacccttaagaaccaacaatctcgaaccaatcttcttaagatta |
317 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2747333 |
attcaaatttattttcgatacctgtttcaagcaccgaataagaacttcactgggatcacccttaagcaccaacaatctcgaaccaatcttcttaagatta |
2747432 |
T |
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| Q |
318 |
aca |
320 |
Q |
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||| |
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| T |
2747433 |
aca |
2747435 |
T |
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