View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6700_low_14 (Length: 319)

Name: NF6700_low_14
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6700_low_14
NF6700_low_14
[»] chr1 (8 HSPs)
chr1 (3-136)||(6492164-6492297)
chr1 (201-292)||(6492362-6492454)
chr1 (209-292)||(12628732-12628816)
chr1 (218-271)||(5720020-5720073)
chr1 (209-292)||(15802064-15802148)
chr1 (209-292)||(12880291-12880375)
chr1 (209-292)||(36700091-36700175)
chr1 (209-292)||(36716195-36716279)
[»] chr8 (12 HSPs)
chr8 (209-292)||(26624044-26624128)
chr8 (209-292)||(21511651-21511735)
chr8 (209-292)||(31801272-31801356)
chr8 (209-292)||(45364214-45364297)
chr8 (226-289)||(12177863-12177927)
chr8 (226-289)||(12422291-12422355)
chr8 (209-267)||(41636409-41636468)
chr8 (209-263)||(25328681-25328735)
chr8 (207-276)||(11660562-11660631)
chr8 (207-276)||(11669731-11669800)
chr8 (208-292)||(17934255-17934340)
chr8 (209-292)||(33561986-33562070)
[»] chr5 (7 HSPs)
chr5 (207-276)||(36977404-36977473)
chr5 (209-292)||(394372-394456)
chr5 (208-292)||(36080566-36080651)
chr5 (209-292)||(10378819-10378903)
chr5 (209-288)||(32270427-32270507)
chr5 (226-292)||(42522134-42522201)
chr5 (210-267)||(15834892-15834949)
[»] chr3 (5 HSPs)
chr3 (209-270)||(19680688-19680749)
chr3 (209-292)||(30847045-30847129)
chr3 (209-266)||(17578863-17578920)
chr3 (209-292)||(30433922-30434006)
chr3 (201-292)||(36735099-36735191)
[»] chr7 (10 HSPs)
chr7 (208-276)||(36802794-36802862)
chr7 (208-292)||(17222057-17222142)
chr7 (229-289)||(21698675-21698736)
chr7 (226-292)||(28606133-28606200)
chr7 (226-276)||(8319946-8319996)
chr7 (227-292)||(25318003-25318069)
chr7 (227-276)||(45234608-45234657)
chr7 (209-292)||(12392120-12392204)
chr7 (209-292)||(12407985-12408069)
chr7 (209-292)||(37597275-37597359)
[»] chr2 (5 HSPs)
chr2 (209-292)||(32493533-32493617)
chr2 (209-292)||(7634757-7634840)
chr2 (209-292)||(39952121-39952205)
chr2 (226-292)||(3436413-3436480)
chr2 (226-292)||(41670091-41670158)
[»] chr6 (6 HSPs)
chr6 (207-270)||(20805796-20805859)
chr6 (201-290)||(17186736-17186826)
chr6 (217-291)||(12158974-12159049)
chr6 (226-292)||(12650097-12650164)
chr6 (208-267)||(20783850-20783909)
chr6 (226-270)||(26289245-26289289)
[»] chr4 (5 HSPs)
chr4 (209-267)||(37873471-37873529)
chr4 (209-292)||(24970044-24970128)
chr4 (209-292)||(50679818-50679902)
chr4 (209-291)||(25142258-25142341)
chr4 (226-276)||(24234891-24234941)
[»] scaffold0024 (1 HSPs)
scaffold0024 (209-292)||(42225-42307)
[»] scaffold0027 (1 HSPs)
scaffold0027 (209-292)||(116654-116738)


Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 6492164 - 6492297
Alignment:
Q  3 aaaccaaaggaattcattaattgaaaactatgtatacaaattaacagggcnnnnnnnttattcgatcatacaattttgattcattccttttaacaataga 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||| ||||||||||    
T  6492164 aaaccaaaggaattcattaattgaaaactatgtatacaaattaacagggcgggggagttattcgatcatacaattttgattctttccttctaacaataga 6492263  T
Q  103 gaatctaactctcttcaataaagacctaggcacg 136  Q
    ||||||||||| |||| |||||||||||||||||    
T  6492264 gaatctaactcccttctataaagacctaggcacg 6492297  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 201 - 292
Target Start/End: Original strand, 6492362 - 6492454
Alignment:
Q  201 caaaggattttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||    
T  6492362 caaaggattttttaaggaaagcttaaaatgaaaaatttgtttgaataaattatcttaaaatgtcattttatgtatttcatcattttgttataa 6492454  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 12628816 - 12628732
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    ||||||||||||  |  |||||||||||||||| |||||| |||||||||||||| |||||| ||| ||||| ||||||||||||    
T  12628816 tttttaaggaaagttttaaatgaaaaatttgtttgaatagtttatcttaaaatgtaattttaagtatttcatcattttgttataa 12628732  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 5720020 - 5720073
Alignment:
Q  218 aaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttat 271  Q
    |||||| ||||| ||||||||||| |||||| |||||||||||| |||||||||    
T  5720020 aaaacttaaaataaaaaatttgtttgaatagtttatcttaaaatatcattttat 5720073  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 15802148 - 15802064
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||| ||  ||| |||||||  ||| |||||| |||||||||||||||||| || ||| ||||| ||||||||||||    
T  15802148 tttttaaggaaagcttcaaacgaaaaatccgtttgaatagcttatcttaaaatgtcattctaagtatttcatcattttgttataa 15802064  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 12880291 - 12880375
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgtat-tcattattttgttataa 292  Q
    ||||||||||||  |  |||||||||||||||| |||||  |||||||||||||  ||| || |||| |||| ||||||||||||    
T  12880291 tttttaaggaaagtttcaaatgaaaaatttgtttgaataatttatcttaaaatgcaattctaagtatctcatcattttgttataa 12880375  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 36700175 - 36700091
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    ||||||||||||| |  |||||||||||  |||  ||||| |||||||||||||||||| || ||| ||||| |||| |||||||    
T  36700175 tttttaaggaaaaattcaaatgaaaaatccgtttaaatagtttatcttaaaatgtcattctaagtatttcatcatttggttataa 36700091  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 36716279 - 36716195
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    ||||||||||||| |  |||||||||||  |||  ||||| |||||||||||||||||| || ||| ||||| |||| |||||||    
T  36716279 tttttaaggaaaaattcaaatgaaaaatccgtttaaatagtttatcttaaaatgtcattctaagtatttcatcatttggttataa 36716195  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 26624128 - 26624044
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||||||  |||||||| ||||||| ||||| ||||||||| ||||| |||||| ||| ||||||||||||||||||    
T  26624128 tttttaaggaaaacttcaaatgaaagatttgtttgaatatattatcttacaatgttattttaagtacttcattattttgttataa 26624044  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 21511735 - 21511651
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||| ||||||| ||  ||||||||| || ||| ||||||||||||||||||||||||| || ||| ||||| ||||||||||||    
T  21511735 ttttcaaggaaagcttcaaatgaaaagttcgtttgaatagattatcttaaaatgtcattctaagtatttcatcattttgttataa 21511651  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 31801356 - 31801272
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    ||||||||||||| |   ||||||||||||||| |||||| |||||||||||||| |||||  ||| ||||| ||||||||||||    
T  31801356 tttttaaggaaaattttgaatgaaaaatttgtttgaatagtttatcttaaaatgtaatttttagtatttcatcattttgttataa 31801272  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 45364214 - 45364297
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||| || ||| ||||||||| ||| |||||| ||| ||||||||||||||||| ||| ||||| ||||||||||||    
T  45364214 tttttaaggaaagcttaaa-tgaaaaattcgtttgaatagtttaacttaaaatgtcattttaagtatttcatcattttgttataa 45364297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 12177863 - 12177927
Alignment:
Q  226 aaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgtta 289  Q
    |||||||||||| ||| |||||  ||||||||||||||||||||| ||| ||||| |||||||||    
T  12177863 aaatgaaaaattcgtttgaataacttatcttaaaatgtcattttaagtatttcatcattttgtta 12177927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 12422291 - 12422355
Alignment:
Q  226 aaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgtta 289  Q
    |||||||||||| ||| |||||  ||||||||||||||||||||| ||| ||||| |||||||||    
T  12422291 aaatgaaaaattcgtttgaataacttatcttaaaatgtcattttaagtatttcatcattttgtta 12422355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 41636409 - 41636468
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatt-tgttcgaatagattatcttaaaatgtcatt 267  Q
    |||||||||||||||  |||||||||| | |||| |||||| ||||||||||||||||||    
T  41636409 tttttaaggaaaacttcaaatgaaaaaatctgtttgaatagtttatcttaaaatgtcatt 41636468  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 25328681 - 25328735
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgt 263  Q
    |||||||||||| ||  |||||||||||||||| |||||  ||||||||||||||    
T  25328681 tttttaaggaaagcttcaaatgaaaaatttgtttgaataacttatcttaaaatgt 25328735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 11660562 - 11660631
Alignment:
Q  207 attttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgtatt 276  Q
    |||||||||||||| ||  |||| |||||||| || |||||| |||| ||||||||||||| || |||||    
T  11660562 attttttaaggaaagcttgaaataaaaaatttatttgaatagcttattttaaaatgtcattataagtatt 11660631  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 11669731 - 11669800
Alignment:
Q  207 attttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgtatt 276  Q
    |||||||||||||| ||  |||| |||||||| || |||||| |||| ||||||||||||| || |||||    
T  11669731 attttttaaggaaagcttgaaataaaaaatttatttgaatagcttattttaaaatgtcattataagtatt 11669800  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 17934255 - 17934340
Alignment:
Q  208 ttttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgtat-tcattattttgttataa 292  Q
    |||||| |||||| || |||||||||||| | || |||||| ||||| |||||||||||| || |||| |||| |||| |||||||    
T  17934255 tttttttaggaaagcttaaaatgaaaaatctatttgaatagtttatcctaaaatgtcattctaggtatgtcatcatttggttataa 17934340  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 33562070 - 33561986
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    ||||||||||||  |  |||||||||||| ||| |||||  |||||||||||||||||| || ||| || || ||||||||||||    
T  33562070 tttttaaggaaagtttcaaatgaaaaattcgtttgaatatcttatcttaaaatgtcattataagtattttatcattttgttataa 33561986  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 36977404 - 36977473
Alignment:
Q  207 attttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgtatt 276  Q
    |||||||||||||||||  ||||||||||| |||| |||||| |||| |||||||||||||||| |||||    
T  36977404 attttttaaggaaaacttcaaatgaaaaatatgtttgaatagtttattttaaaatgtcattttaagtatt 36977473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 394456 - 394372
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||| ||||||| ||  ||||||||||| |||| |||||| |||||||||||||||||| || ||| ||||| ||||||||||||    
T  394456 ttttcaaggaaagcttcaaatgaaaaatctgtttgaatagcttatcttaaaatgtcattctaagtatttcatcattttgttataa 394372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 36080566 - 36080651
Alignment:
Q  208 ttttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    ||||||||| ||||||| |||||||||||  ||| |||||| |||||||||||| || || || ||| ||||| ||||||||||||    
T  36080566 ttttttaagaaaaactgcaaatgaaaaatcagtttgaatagcttatcttaaaatatcgttctaagtatttcatcattttgttataa 36080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 10378903 - 10378819
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||| ||  ||| ||||||| |||| |||||| |||||||||||||||||| || ||| |||||  |||||||||||    
T  10378903 tttttaaggaaagcttcaaacgaaaaatctgtttgaatagtttatcttaaaatgtcattctaagtatttcatcgttttgttataa 10378819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 32270507 - 32270427
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgtt 288  Q
    |||| ||| ||||||  |||||||||||||||| |||||  ||||||||||||| ||||||| ||| ||||| ||||||||    
T  32270507 ttttcaagtaaaacttcaaatgaaaaatttgtttgaatatcttatcttaaaatgacattttaagtatttcatcattttgtt 32270427  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 42522134 - 42522201
Alignment:
Q  226 aaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||| ||| |||||| |||||||||||||||||| || ||| ||||| ||||| ||||||    
T  42522134 aaatgaaaaattcgtttgaatagcttatcttaaaatgtcattctaagtatttcatcattttattataa 42522201  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 15834949 - 15834892
Alignment:
Q  210 ttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcatt 267  Q
    ||||||||||| ||  |||| ||||||| ||| |||||| ||||||||||||||||||    
T  15834949 ttttaaggaaagcttcaaataaaaaattggtttgaatagtttatcttaaaatgtcatt 15834892  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 19680688 - 19680749
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcatttta 270  Q
    |||| ||||||||||  |||||||||||||||| |||||| |||||||||||||||||||||    
T  19680688 ttttcaaggaaaacttcaaatgaaaaatttgtttgaatagtttatcttaaaatgtcatttta 19680749  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 30847129 - 30847045
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    ||||||||||||  |  |||||||||||||||| |||||  |||||||||||||||||| || ||| ||||| ||||||||||||    
T  30847129 tttttaaggaaagtttcaaatgaaaaatttgtttgaataacttatcttaaaatgtcattctaagtatttcatcattttgttataa 30847045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 17578920 - 17578863
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcat 266  Q
    |||| ||||||| || ||||||||||||| ||| |||||| |||||||||||||||||    
T  17578920 ttttcaaggaaagcttaaaatgaaaaattcgtttgaatagcttatcttaaaatgtcat 17578863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 30433922 - 30434006
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||| ||  |||| |||||||  || |||||| |||||||||||||||||||||  || ||||| ||||||||||||    
T  30433922 tttttaaggaaagcttcaaataaaaaattgatttgaatagcttatcttaaaatgtcattttagatatttcatcattttgttataa 30434006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 36735191 - 36735099
Alignment:
Q  201 caaaggattttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    ||||| |||||||||||||||||  |||| ||||||  ||| |||||| |||||||||||||| ||| ||  || ||||| ||||||||||||    
T  36735191 caaagaattttttaaggaaaacttcaaataaaaaatcagtttgaatagcttatcttaaaatgttattctagatatttcatcattttgttataa 36735099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 36802794 - 36802862
Alignment:
Q  208 ttttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgtatt 276  Q
    ||||||||| ||| || ||||||||||||| ||| |||||| ||||||| ||||||||||||| |||||    
T  36802794 ttttttaagaaaagcttaaaatgaaaaattcgtttgaatagcttatcttgaaatgtcattttaagtatt 36802862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 17222142 - 17222057
Alignment:
Q  208 ttttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||||  |  |||||||||||  ||| |||||| ||||||| ||||||||||||||||| ||||| || |||||||||    
T  17222142 ttttttaaggaaagtttcaaatgaaaaatcagtttgaatagcttatcttcaaatgtcattttatgtatttcatcatcttgttataa 17222057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 21698675 - 21698736
Alignment:
Q  229 tgaaaaatttgttcgaatagattatcttaaaatgtcattttatgt-attcattattttgtta 289  Q
    ||||||||| ||| ||||||||||| ||||||||||||| ||||| |||||| |||||||||    
T  21698675 tgaaaaattcgtttgaatagattattttaaaatgtcattctatgtaattcatcattttgtta 21698736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 28606133 - 28606200
Alignment:
Q  226 aaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||||||| |||||| |||||||||||||| ||| || ||| ||||| |||| |||||||    
T  28606133 aaatgaaaaatttgtttgaatagtttatcttaaaatgtgattctaagtatttcatcatttggttataa 28606200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 8319946 - 8319996
Alignment:
Q  226 aaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgtatt 276  Q
    |||||||||||||||| |||||  |||||||||||||||||| || |||||    
T  8319946 aaatgaaaaatttgtttgaataacttatcttaaaatgtcattctaagtatt 8319996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 25318003 - 25318069
Alignment:
Q  227 aatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgtatt-cattattttgttataa 292  Q
    ||||||||| | ||| |||||| |||||||||||||| |||||| ||||| ||| ||||||||||||    
T  25318003 aatgaaaaaatcgtttgaatagtttatcttaaaatgtaattttaagtattccatcattttgttataa 25318069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 45234657 - 45234608
Alignment:
Q  227 aatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgtatt 276  Q
    |||||||||||||||  ||||| |||||||||||||||||| || |||||    
T  45234657 aatgaaaaatttgtttcaatagtttatcttaaaatgtcattctaagtatt 45234608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 12392120 - 12392204
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||| ||||||| ||  ||||||||||| | || |||||| |||||||||||||||||| || ||| ||||| |||| |||||||    
T  12392120 ttttcaaggaaagcttcaaatgaaaaatctatttgaatagtttatcttaaaatgtcattctaagtatttcatcatttcgttataa 12392204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 12407985 - 12408069
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||| ||||||| ||  ||||||||||| | || |||||| |||||||||||||||||| || ||| ||||| |||| |||||||    
T  12407985 ttttcaaggaaagcttcaaatgaaaaatctatttgaatagtttatcttaaaatgtcattctaagtatttcatcatttcgttataa 12408069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 37597275 - 37597359
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||| ||||||| ||  |||||||||||| ||| |||||| ||| |||||||||||||| || ||| ||||| |||| |||||||    
T  37597275 ttttcaaggaaagcttcaaatgaaaaattcgtttgaatagcttaacttaaaatgtcattctaagtatttcatcatttggttataa 37597359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 32493533 - 32493617
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||| ||  ||| |||||||||||| |||||| |||||||||||||||||| || ||| ||||| |||| |||||||    
T  32493533 tttttaaggaaagcttcaaaagaaaaatttgtttgaatagtttatcttaaaatgtcattctaagtatttcatcatttggttataa 32493617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 7634840 - 7634757
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||| || ||| ||||||||| ||| |||||| ||| |||||||||||||| || ||| ||||| ||||||||||||    
T  7634840 tttttaaggaaagcttaaa-tgaaaaattcgtttgaatagcttaacttaaaatgtcattctaagtatttcatcattttgttataa 7634757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 39952121 - 39952205
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||| ||  |||| |||||||| || |||||  |||||||||||||||||| || ||| ||||| ||||||||||||    
T  39952121 tttttaaggaaagcttcaaataaaaaatttatttgaataatttatcttaaaatgtcattctaagtatttcatcattttgttataa 39952205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 3436413 - 3436480
Alignment:
Q  226 aaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    ||||||||||||  || |||||| |||||||||||||||||| || ||| ||||| ||||||||||||    
T  3436413 aaatgaaaaattcatttgaatagtttatcttaaaatgtcattctaagtatttcatcattttgttataa 3436480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 41670091 - 41670158
Alignment:
Q  226 aaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    ||||||||| |||||| |||||| |||| ||||||||||||| || ||| ||||| ||||||||||||    
T  41670091 aaatgaaaattttgtttgaatagcttatattaaaatgtcattctaagtatttcatcattttgttataa 41670158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 20805796 - 20805859
Alignment:
Q  207 attttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcatttta 270  Q
    |||||| ||||||| ||  |||||||||||||||| || ||| |||||||||||||||||||||    
T  20805796 atttttcaaggaaagcttcaaatgaaaaatttgtttgagtagcttatcttaaaatgtcatttta 20805859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 17186736 - 17186826
Alignment:
Q  201 caaaggattttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttat 290  Q
    ||||| ||||||| |||||| ||  ||||||||||| |||| |||||| |||||||||||||||||  || ||| ||||| ||||||||||    
T  17186736 caaagaatttttttaggaaagcttcaaatgaaaaatctgtttgaatagcttatcttaaaatgtcatgctaagtatttcatcattttgttat 17186826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 12158974 - 12159049
Alignment:
Q  217 gaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttata 291  Q
    |||||||  |||||||||||| ||| |||||  |||||||||||||||||||||  || ||||| |||||||||||    
T  12158974 gaaaacttcaaatgaaaaattcgtttgaataacttatcttaaaatgtcattttaaatagttcatcattttgttata 12159049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 12650097 - 12650164
Alignment:
Q  226 aaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||  |||  ||||| ||||||||||||||||||||| ||| ||||| ||||||||||||    
T  12650097 aaatgaaaaatacgtttaaatagtttatcttaaaatgtcattttaagtatttcatcattttgttataa 12650164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 20783850 - 20783909
Alignment:
Q  208 ttttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcatt 267  Q
    ||||| ||||||||||  |||| ||||||||||| |||||| ||||||| ||||||||||    
T  20783850 tttttgaaggaaaactttaaataaaaaatttgtttgaatagtttatcttcaaatgtcatt 20783909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 26289289 - 26289245
Alignment:
Q  226 aaatgaaaaatttgttcgaatagattatcttaaaatgtcatttta 270  Q
    |||| ||||||||||| |||||  |||||||||||||||||||||    
T  26289289 aaataaaaaatttgtttgaataacttatcttaaaatgtcatttta 26289245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 37873471 - 37873529
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcatt 267  Q
    |||||||||||||||  ||||||||||| |||| |||||| |||||| |||||||||||    
T  37873471 tttttaaggaaaacttcaaatgaaaaatatgtttgaatagtttatctaaaaatgtcatt 37873529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 24970128 - 24970044
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    ||||||||||||  |  |||||||||||||||| |||||| ||| |||||||||||||| || ||| ||||| |||| |||||||    
T  24970128 tttttaaggaaagtttcaaatgaaaaatttgtttgaatagcttaacttaaaatgtcattctaagtatttcatcatttggttataa 24970044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 50679818 - 50679902
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||| ||||||| ||  |||||||||||||||| |||||| |||||||||||| ||||| || ||| ||||| |||| |||||||    
T  50679818 ttttcaaggaaagcttcaaatgaaaaatttgtttgaatagtttatcttaaaatatcattctaagtatttcatcatttggttataa 50679902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 291
Target Start/End: Complemental strand, 25142341 - 25142258
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttata 291  Q
    |||| ||||||||||  |||||||||||| ||| |||||  |||| ||||||||||||| || ||| ||||| |||||||||||    
T  25142341 ttttcaaggaaaacttcaaatgaaaaattcgtttgaataacttattttaaaatgtcattctaagtatttcatcattttgttata 25142258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 24234941 - 24234891
Alignment:
Q  226 aaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgtatt 276  Q
    |||||||||||| ||| |||||  ||||||||||||||||||||| |||||    
T  24234941 aaatgaaaaattcgtttgaataacttatcttaaaatgtcattttaagtatt 24234891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 42307 - 42225
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||| || |||||||||  | |||| |||||| |||||||||||||||||| || ||| ||||| |||| |||||||    
T  42307 tttttaaggaaatcttaaaatgaaa--tctgtttgaatagtttatcttaaaatgtcattctaagtatttcatcatttggttataa 42225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 116654 - 116738
Alignment:
Q  209 tttttaaggaaaactgaaaatgaaaaatttgttcgaatagattatcttaaaatgtcattttatgta-ttcattattttgttataa 292  Q
    |||||||||||| ||  |||||||||||   || |||||| |||||||||||| |||| ||| ||| ||||| ||||||||||||    
T  116654 tttttaaggaaagcttcaaatgaaaaatccttttgaatagtttatcttaaaatatcatcttaagtatttcatcattttgttataa 116738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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