View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_low_16 (Length: 287)
Name: NF6700_low_16
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 26279751 - 26280019
Alignment:
| Q |
1 |
ataatgggttaatttttaaacttcttgacaaatgttgtcaatgttaatcatcaagaaattagtcttatttggttggagctttgatcaaactaaacattgg |
100 |
Q |
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| T |
26279751 |
ataatgggttaatttttaaacttcttgacaaatgttgtcaatgttaatcatcaagaaattagtcttatttggttggagctttgatcaaactaaacattgg |
26279850 |
T |
|
| Q |
101 |
acataacagtgttaaacttcttgcaatcaatttgagaaatcatacgcacgtgcgaagtaagaaaatttgttacaattgtagccattcctaaagtgatagc |
200 |
Q |
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| T |
26279851 |
acataacagtgttaaacctcttgcaatcaatttgagaaatcatacgcacgtgcgaagtaagaaaatttgttacaattgtagccattcctaaagtgatagc |
26279950 |
T |
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| Q |
201 |
acctatacgtgatttaaaccacgtcccttagataatcaggcatgtcactactcaaactaaattaaaata |
269 |
Q |
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| T |
26279951 |
acctatacatgatttaaaccacgtcccttagataattaggcatgtcactactcaaactaaattaaaata |
26280019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 32590447 - 32590271
Alignment:
| Q |
5 |
tgggttaatttttaaacttcttgacaaatgttgtcaatgttaatcatcaagaaattagtcttatttggttggagctttgatcaaactaaacattggacat |
104 |
Q |
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| T |
32590447 |
tgggttaatttttaaactttttgacgaatgttgtcaatgttaattatcaagaaattagtcttatttggtcggagctttggtcaaactatacactggacat |
32590348 |
T |
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| Q |
105 |
aacagtgttaaacttcttgcaatcaatttgagaaatcatacgcacgtgcgaagta--agaaaatttgttacaattgtag |
181 |
Q |
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| T |
32590347 |
aacagtgctaaacttattgcgat--atttgagaaatcgtacgcacatgtgaagtatgagaaaatgtgtcacaattgtag |
32590271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 31611723 - 31611787
Alignment:
| Q |
204 |
tatacgtgatttaaaccacgtcccttagataatcaggcatgtcactactcaaactaaattaaaat |
268 |
Q |
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||||| |||||||||| | |||||||||||||| |||||||| ||| |||||||||||| ||||| |
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| T |
31611723 |
tatacatgatttaaacgatgtcccttagataataaggcatgttactgctcaaactaaatcaaaat |
31611787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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