View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_low_17 (Length: 277)
Name: NF6700_low_17
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 269
Target Start/End: Original strand, 1711832 - 1712079
Alignment:
| Q |
22 |
aaagtccaaatagatggaacaaaaagtacgtgcgatcaatatcatgcatgtgtccatattctagaaagtatatcgtaagtttactatagagctagtgttt |
121 |
Q |
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| T |
1711832 |
aaagtccaaatagatggaacaaaaagtacgtgcgatcaatatcatgcatgtgtccatattctagaaagtatatcgtaagtttactatagagctagtgttt |
1711931 |
T |
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| Q |
122 |
ctatcaaatcaatttgggaattgctgatataactagatatgaacacagcaatatgattaacaaaattgagttttaatttgtcaattatcaaagtttagag |
221 |
Q |
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| T |
1711932 |
ctatcaaatcaatttgggaattgccgatataactagatatgaacacagcaatatgattaacaaaattgagttttaatttgtcaattatcaaagtttagag |
1712031 |
T |
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| Q |
222 |
ataaaacctactcatcaaattagttcatgcacctaactttgatgtcca |
269 |
Q |
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| T |
1712032 |
ataaaacctactcatcaaattagttcatgcacctaactttggtgtcca |
1712079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 1711747 - 1711716
Alignment:
| Q |
1 |
aaagtaactaccaaagcaaataaagtccaaat |
32 |
Q |
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| T |
1711747 |
aaagtaactaccaaagcaaataaagtccaaat |
1711716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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