View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_low_19 (Length: 249)
Name: NF6700_low_19
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_19 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0098 (1 HSPs) |
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| [»] scaffold0070 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 29 - 249
Target Start/End: Complemental strand, 26280340 - 26280120
Alignment:
| Q |
29 |
tgtgtcattcatttttatcacttgtattagaaaaataatagagagaaacagagagaggaaggcctgagtggccataggagggctagggagcttgattcca |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26280340 |
tgtgtcattcatttttatcacttgtattagaaaaataatagagagaaacagagagaggaaggcctgagtggccataggagggctagggagcttgattcca |
26280241 |
T |
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| Q |
129 |
aattttttgatgctttgtcaacattcatcaaccttctcttgttagttatgctctccatgggtaactgaacttacttttatattgggattagatgtaaata |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26280240 |
aattttttgatgctttgtcaacattcatcaaccttctcttgttagttatgctctccatgggtaactgaacttacttttatattgggattagatgtaaata |
26280141 |
T |
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| Q |
229 |
tctaggattctatgtattact |
249 |
Q |
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||||||||||||||||||||| |
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| T |
26280140 |
tctaggattctatgtattact |
26280120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 11223137 - 11222991
Alignment:
| Q |
103 |
taggagggctagggagcttgattccaaattttttgatgctttgtcaacattcatcaaccttctcttgttagttatgctctccatgggtaactgaacttac |
202 |
Q |
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|||||||| ||||||||||| | ||| || ||||||||| |||| | ||||||| || |||||||| ||||||| ||||||||||||| |||| |
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| T |
11223137 |
taggagggttagggagcttgtattcaagcttgttgatgcttctccaacttccatcaacattatcttgttatttatgctttccatgggtaactaaactcta |
11223038 |
T |
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| Q |
203 |
ttttatattgggattagatgtaaatatctaggattctatgtattact |
249 |
Q |
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|||| | | || |||||||||||||| ||| |||||||||| |||| |
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| T |
11223037 |
ttttgtgtcggaattagatgtaaatagttagtattctatgtagtact |
11222991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 237
Target Start/End: Original strand, 28608959 - 28609129
Alignment:
| Q |
65 |
aatagagaga-aacagagagaggaaggcctgagtggccataggagggctagggagcttg-attccaaattttttgatgctttgtcaacattcatcaacct |
162 |
Q |
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|||||||||| ||| |||||||||||||||||| ||||||||| ||||||||||||| |||| || ||||||||||| |||||| ||||||| |
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| T |
28608959 |
aatagagagagaacggagagaggaaggcctgagccaccataggagagctagggagcttggattc--aagcttttgatgcttctccaacatctttcaacct |
28609056 |
T |
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| Q |
163 |
tctcttgttagttatgctctccatgggtaactgaacttacttttatattgggattagatgtaaatatctaggatt |
237 |
Q |
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|||||||||||||||| ||| ||||| ||||| |||| || || | || |||||||||||||||| |||||||| |
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| T |
28609057 |
tctcttgttagttatgttctacatggataactaaact--ctcttgtgttaggattagatgtaaatagctaggatt |
28609129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 13002701 - 13002623
Alignment:
| Q |
171 |
tagttatgctctccatgggtaactgaacttacttttatattgggattagatgtaaatatctaggattctatgtattact |
249 |
Q |
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|||||||||||||||| |||||| || || |||| | ||||||||||||||||||||||| |||||||||||||||| |
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| T |
13002701 |
tagttatgctctccatatgtaactaaaatttctttcgtgttgggattagatgtaaatatctaagattctatgtattact |
13002623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 13077359 - 13077281
Alignment:
| Q |
171 |
tagttatgctctccatgggtaactgaacttacttttatattgggattagatgtaaatatctaggattctatgtattact |
249 |
Q |
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|||||||||||||||| |||||| || || |||| | ||||||||||||||||||||||| |||||||||||||||| |
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| T |
13077359 |
tagttatgctctccatatgtaactaaaatttctttcgtgttgggattagatgtaaatatctaagattctatgtattact |
13077281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 2136548 - 2136511
Alignment:
| Q |
155 |
atcaaccttctcttgttagttatgctctccatgggtaa |
192 |
Q |
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||||||||||| ||||||||||||||||||||| |||| |
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| T |
2136548 |
atcaaccttcttttgttagttatgctctccatgagtaa |
2136511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 23391390 - 23391298
Alignment:
| Q |
155 |
atcaaccttctcttgttagttatgctctccatgggtaactgaacttacttttatattgggattagatgtaaatatctaggattctatgtattact |
249 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||| | || || |||||| ||||||||| ||||||||||||||| |||| |
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| T |
23391390 |
atcaaccgtctcttgttagttatgctctccatgggtaactaaact--agtgtacgtttggattacatgtaaatagctaggattctatgtagtact |
23391298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 31611969 - 31611892
Alignment:
| Q |
165 |
tcttgttagttatgctctccatgggtaactgaacttacttttatattgggattagatgtaaatatctaggattctatg |
242 |
Q |
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|||||||| ||||| ||||||||||||||| |||| |||| | ||||||||||||||||||| || |||||||||| |
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| T |
31611969 |
tcttgttatttatgttctccatgggtaactaaactatattttgtgttgggattagatgtaaatagcttggattctatg |
31611892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 3241 - 3343
Alignment:
| Q |
147 |
caacattcatcaac-cttctcttgttagttatgctctccatgggtaactgaacttacttttatattgggattagatgtaaatatctaggattctatgtat |
245 |
Q |
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|||||||||||||| ||||| ||||||||||||| ||||||||||| ||||| ||||||| |||||||| |||||||||| ||| | |||||||| |
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| T |
3241 |
caacattcatcaactcttct-ttgttagttatgcatatcatgggtaactaaactttcttttatgttgggattggatgtaaataggtagaaatctatgtag |
3339 |
T |
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| Q |
246 |
tact |
249 |
Q |
| |
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|||| |
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| T |
3340 |
tact |
3343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 2843 - 2759
Alignment:
| Q |
165 |
tcttgttagttatgctctccatgggtaactgaacttacttttatattgggattagatgtaaatatctaggattctatgtattact |
249 |
Q |
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|||||||||||||||||| ||||||||||| |||| ||||| | || |||||||| |||||| |||||||||| ||| |||| |
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| T |
2843 |
tcttgttagttatgctcttcatgggtaactaaactctcttttgtgtttcgattagatttaaatacttaggattctacgtagtact |
2759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 22116474 - 22116542
Alignment:
| Q |
166 |
cttgttagttatgctctccatgggtaactgaacttacttttatattgggattagatgtaaatatctagg |
234 |
Q |
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||||||| |||||||||||||||||| || | || || ||| | ||||||||||||||||||| ||||| |
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| T |
22116474 |
cttgttatttatgctctccatgggtatctaatctcacgtttgtgttgggattagatgtaaatagctagg |
22116542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 30952034 - 30952112
Alignment:
| Q |
100 |
ccataggagggctagggagcttgattccaaattttttgatgctttgtcaacattcatcaaccttctcttgttagttatg |
178 |
Q |
| |
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||||||||||||||||||| |||||||||| ||| |||| |||| ||| ||| ||| ||||||| ||||| |||||| |
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| T |
30952034 |
ccataggagggctagggaggttgattccaagtttgttgaagcttctccaaaatttatcgaccttctattgttggttatg |
30952112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 15308636 - 15308534
Alignment:
| Q |
147 |
caacattcatcaaccttctcttgttagttatgc-tctccatgggtaactgaacttacttttatattgggattagatgtaaatatctaggattctatgtat |
245 |
Q |
| |
|
||||||||||||||| ||| |||||||| |||| |||| |||||||||| |||| ||||||| |||| |||||||||| ||| ||| || | |||||| |
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| T |
15308636 |
caacattcatcaaccctctgttgttagtcatgcatctc-atgggtaactaaactctcttttatgttggaattagatgtatatagctatgaatttatgtag |
15308538 |
T |
|
| Q |
246 |
tact |
249 |
Q |
| |
|
|||| |
|
|
| T |
15308537 |
tact |
15308534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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