View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_low_21 (Length: 245)
Name: NF6700_low_21
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 33116024 - 33115803
Alignment:
| Q |
15 |
caatgagtgccactgtgaaccagtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcat |
114 |
Q |
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| T |
33116024 |
caatgagtgccactgtgaaccagtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcat |
33115925 |
T |
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| Q |
115 |
agttttagcttctggaatccatccaattgcactgaaaatatctttctggaaaagattctgactataataagcaatatccaacaagaaccaagtcatagca |
214 |
Q |
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| T |
33115924 |
agttttagcttctggaatccatccaattgcactgaaaatatctttctggaaaagattttgactataataagcaatatccaacaagaaccaagtcatagca |
33115825 |
T |
|
| Q |
215 |
gttccaagcaagtgatgtccat |
236 |
Q |
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||||||||||||||| |||||| |
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| T |
33115824 |
gttccaagcaagtgaagtccat |
33115803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 30620007 - 30620184
Alignment:
| Q |
15 |
caatgagtgccactgtgaaccagtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcat |
114 |
Q |
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|||||| ||| ||||||||||||||||||||||| |||||||| | ||| || ||||| || || || ||||| || ||||||||||| || ||| |||| |
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| T |
30620007 |
caatgaatgcaactgtgaaccagtaaccaggaactgtactgcataatgcaataagtgtttgcgccctcgcaattttataaacctcttcaagtgcattcat |
30620106 |
T |
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| Q |
115 |
agttttagcttctggaatccatccaattgcactgaaaatatctttctggaaaagattctgactataataagcaatatc |
192 |
Q |
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| T |
30620107 |
cgtctttgcagacggaatccaaccaattgcactgaagatatccttttggaaaagattctgactgtaaaatgcaatatc |
30620184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 204
Target Start/End: Complemental strand, 16184869 - 16184694
Alignment:
| Q |
29 |
gtgaaccagtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcatagttttagcttctg |
128 |
Q |
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|||||||||||||| |||||||||||||| | || || ||||| |||||||| ||||||||||||||||| | | ||| |||| ||| || | |
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| T |
16184869 |
gtgaaccagtaacccggaacagtactgcacaacgcaataagtgtttgtgctcttgcaatcttgtaaacctcatgaattgcattcatttcttttgccggag |
16184770 |
T |
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| Q |
129 |
gaatccatccaattgcactgaaaatatctttctggaaaagattctgactataataagcaatatccaacaagaacca |
204 |
Q |
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| T |
16184769 |
gtatccatccaattgcgctaaaaatgtccttttggaaaagattctgactatagaaagcaatatccaacaaaaacca |
16184694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 16224262 - 16224084
Alignment:
| Q |
26 |
actgtgaaccagtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcatagttttagctt |
125 |
Q |
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||||||||||||||||| |||||||||||||| | || || ||||| |||||||| ||||||||||||||||| | | ||| |||| ||| || |
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| T |
16224262 |
actgtgaaccagtaacccggaacagtactgcacaacgcaataagtgtttgtgctcttgcaatcttgtaaacctcatgaattgcattcatttcttttgccg |
16224163 |
T |
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| Q |
126 |
ctggaatccatccaattgcactgaaaatatctttctggaaaagattctgactataataagcaatatccaacaagaacca |
204 |
Q |
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|| |||||||| ||||| || ||||| || || |||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
16224162 |
gagggatccatccgattgcgctaaaaatgtccttttggaaaagattctgactatagaaagcaatatccaacaaaaacca |
16224084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 207
Target Start/End: Original strand, 16174490 - 16174671
Alignment:
| Q |
26 |
actgtgaaccagtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcatagttttagctt |
125 |
Q |
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|||||||||||||| || |||||||||||||| | || || ||||| |||||||| ||||||||||||||||| | | ||| |||| ||| || |
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| T |
16174490 |
actgtgaaccagtagcccggaacagtactgcacaacgcaataagtgtttgtgctcttgcaatcttgtaaacctcatgaattgcattcatttcttttgccg |
16174589 |
T |
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| Q |
126 |
ctggaatccatccaattgcactgaaaatatctttctggaaaagattctgactataataagcaatatccaacaagaaccaagt |
207 |
Q |
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|| |||||||| ||||| || ||||| || || |||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
16174590 |
gagggatccatccgattgcgctaaaaatgtccttttggaaaagattctgactatagaaagcaatatccaacaaaaaccaagt |
16174671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 30615253 - 30615292
Alignment:
| Q |
15 |
caatgagtgccactgtgaaccagtaaccaggaacagtact |
54 |
Q |
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| T |
30615253 |
caatgagtgccactgtgaaccagtaaccaggaactgtact |
30615292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 33109851 - 33109791
Alignment:
| Q |
147 |
tgaaaatatctttctggaaaagattctgactataataagcaatatccaacaagaaccaagt |
207 |
Q |
| |
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|||||||||| || || |||||||||||||| || ||||||| ||||||||||||||||| |
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| T |
33109851 |
tgaaaatatccttttgaaaaagattctgactgtagaaagcaatgtccaacaagaaccaagt |
33109791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 38894065 - 38893873
Alignment:
| Q |
15 |
caatgagtgccactgtgaaccagtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcat |
114 |
Q |
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||||||| ||||| || |||||||| || ||||| |||||||| || || || ||||| || ||||| || || ||||||||||| || || ||| |||| |
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| T |
38894065 |
caatgagagccaccgtaaaccagtagcctggaactgtactgcatagagcaataagtgtttgagctcttgcgattttgtaaacctcctcaagtgcattcat |
38893966 |
T |
|
| Q |
115 |
agttttagcttctggaatccatccaattgcactgaaaatatctttctggaaaagattctgactataataagcaatatccaacaagaaccaagt |
207 |
Q |
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||||| || ||| ||||| |||||||||||||| ||||| |||||||| ||||| ||||| ||| | || ||||| | |||||||||||| |
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| T |
38893965 |
agtttgtgcaggtggtatccaaccaattgcactgaagatatccttctggaagagattttgactgtaaaatgctatatcaagcaagaaccaagt |
38893873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 38884871 - 38884687
Alignment:
| Q |
23 |
gccactgtgaaccagtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcatagttttag |
122 |
Q |
| |
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||||| || ||||| ||||| ||||| |||||||| || || || ||||| || |||| |||||| ||||||||||| || || ||| |||| |||| | |
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| T |
38884871 |
gccacggtaaaccaataacctggaactgtactgcatagagcaataagtgtttgagctcgagcaattttgtaaacctcctcaagtgcattcatggtttgtg |
38884772 |
T |
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| Q |
123 |
cttctggaatccatccaattgcactgaaaatatctttctggaaaagattctgactataataagcaatatccaacaagaaccaagt |
207 |
Q |
| |
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||| ||||| |||||||| ||||||||||| |||||||| ||||| || |||||| | || ||||| | |||||||||||| |
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| T |
38884771 |
gaggtggtatccaaccaattgcgctgaaaatatccttctggaagagattttggctataaaatgctatatcaagcaagaaccaagt |
38884687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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