View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6700_low_23 (Length: 242)
Name: NF6700_low_23
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 17152515 - 17152745
Alignment:
| Q |
1 |
acaaccttgaaggaatagaataccaactaatatgtacttccaatccaatacaacatacaataatttctacatttgccgatgtgaacataatcgcagctgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17152515 |
acaaccttgaaggaatagaataccaactaatatgtacttacaatccaatacaacatacaataatttctacatttgccgatgtgaacataatcgcagctgc |
17152614 |
T |
|
| Q |
101 |
agcaactaattctaacaaaaatgctgcagacattgcttcctaaatttcatcagtaaaacttaaaagatgcttaaagtcattagctgtatacaccggccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17152615 |
agcaactaattctaacaaaaatgctgcagacattgcttcctaaatttcatcagtaaaacttaaaagatgattaaagtcattagctgtatacaccggccaa |
17152714 |
T |
|
| Q |
201 |
aataatattctcagtaaaagattgttgatgt |
231 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
17152715 |
aataatattctcagcaaaagattgttgatgt |
17152745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 1823021 - 1822841
Alignment:
| Q |
26 |
actaatatgtacttccaatccaatacaacatacaataatttctacatttgccgatgtgaacataatcgcagctgcagcaactaattctaacaaaaatgct |
125 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
1823021 |
actaatatgtacttgcaatccaatacaacatacaataatttctacatttaaac-tgtaaacataatcgcagctgcatcaactaattctaacaaaaatgtt |
1822923 |
T |
|
| Q |
126 |
gcagacattgcttcctaaatttcatcagtaaaacttaaaagatgcttaaagtcattagctgtatacaccggccaaaataata |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1822922 |
gcagacattgcttcctatatttcatcagtaaaattaaaaagatgattaaagtcattagttgtatacaccggccaaaataata |
1822841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 1857466 - 1857286
Alignment:
| Q |
26 |
actaatatgtacttccaatccaatacaacatacaataatttctacatttgccgatgtgaacataatcgcagctgcagcaactaattctaacaaaaatgct |
125 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
1857466 |
actaatatgtacttgcaatccaatacaacatacaataatttctacatttaaac-tgtaaacataatcgcagctgcatcaactaattctaacaaaaatgtt |
1857368 |
T |
|
| Q |
126 |
gcagacattgcttcctaaatttcatcagtaaaacttaaaagatgcttaaagtcattagctgtatacaccggccaaaataata |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1857367 |
gcagacattgcttcctatatttcatcagtaaaattaaaaagatgattaaagtcattagttgtatacaccggccaaaataata |
1857286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 16674747 - 16674678
Alignment:
| Q |
135 |
gcttcctaaatttcatcagtaaaacttaaaagatgcttaaagtcattagctgtatacaccggccaaaata |
204 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
16674747 |
gcttcctatatttcatcagtaaaactaaaaagatgattaaagtcattagctgaatacaccggccaaaata |
16674678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 17649115 - 17649046
Alignment:
| Q |
135 |
gcttcctaaatttcatcagtaaaacttaaaagatgcttaaagtcattagctgtatacaccggccaaaata |
204 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
17649115 |
gcttcctatatttcatcagtaaaactaaaaagatgattaaagtcattagctgaatacaccggccaaaata |
17649046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 16681269 - 16681187
Alignment:
| Q |
26 |
actaatatgtacttccaatccaatacaacatacaataatttctacatttgccgatgtgaacataatcgcagctgcagcaactaa |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| | | | |||||||||||||||||| ||||||| |
|
|
| T |
16681269 |
actaatatgtacttacaatccaatacaacatacaataatttctacattt-acattctaaacataatcgcagctgcatcaactaa |
16681187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 17655505 - 17655423
Alignment:
| Q |
26 |
actaatatgtacttccaatccaatacaacatacaataatttctacatttgccgatgtgaacataatcgcagctgcagcaactaa |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| | | | |||||||||||||||||| ||||||| |
|
|
| T |
17655505 |
actaatatgtacttacaatccaatacaacatacaataatttctacattt-acattctaaacataatcgcagctgcatcaactaa |
17655423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University