View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_low_24 (Length: 241)
Name: NF6700_low_24
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 6709942 - 6710164
Alignment:
| Q |
20 |
gtgtcagctattgtcattcaatggtaatcgagctcctctcccttccccactatctatgaattgtgtttaaactacct-agaatgtggtatagttaatgta |
118 |
Q |
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| T |
6709942 |
gtgtcagctattgtcattcaatggtaatcgagctcctctcccttccccactatctatgaattgtgtttaaactatcttagaatgtggtatagttaatgta |
6710041 |
T |
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| Q |
119 |
ctaatgtaccaattttattagtattatgtctgatgcatcaatcttatgtataatttgtctcctcatgaagcaagtgtgtcatcgggatctgaagttggaa |
218 |
Q |
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| T |
6710042 |
ctaatgtaccaattttattagtattatgtctgatgcatcaatcttatgtataatttgtctcctcatgaagcaagtatgtcatcgggatctgaagttggaa |
6710141 |
T |
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| Q |
219 |
aacactttgttggatggagatcc |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
6710142 |
aacactttgttggatggagatcc |
6710164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 34129026 - 34128925
Alignment:
| Q |
140 |
tattatgtctgatgcatca-----atcttatgtataatttgtctcctcatgaagcaagtgtgtcatcgggatctgaagttggaaaacactttgttggatg |
234 |
Q |
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||||||| ||||||||||| ||||||||| |||| |||||| ||||||||||||| ||||| ||||| ||||| |||||||| ||||||||||||| |
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| T |
34129026 |
tattatgcctgatgcatcagtcttatcttatgtgtaatgtgtctcttcatgaagcaagtatgtcaccgggacctgaaattggaaaatactttgttggatg |
34128927 |
T |
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| Q |
235 |
ga |
236 |
Q |
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| T |
34128926 |
ga |
34128925 |
T |
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