View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_low_27 (Length: 238)
Name: NF6700_low_27
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 229
Target Start/End: Original strand, 25584883 - 25585048
Alignment:
| Q |
59 |
gattcagattctattatttaaacatatagtaggattttagaatggnnnnnnnnnnnntaaggttgcatgagaaatacaaatggtgcatgataaacacgta |
158 |
Q |
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| T |
25584883 |
gattcagattctattatttaaacaaatagtagtattttagaaaggaaaaaaaaaa---aaggttgcatgagaaatacaaatggtgcat----aacacgta |
25584975 |
T |
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| Q |
159 |
gattgaacaataatggtccatccctccctacnnnnnnnnnt--acaaaaacaataatagtccaatttgtgtga |
229 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25584976 |
gattgaacaataatggtctatccctccctacaaaaaaaaaataacaaaaacaataatagtccaatttgtgtga |
25585048 |
T |
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