View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6700_low_3 (Length: 592)
Name: NF6700_low_3
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 55670424 - 55670996
Alignment:
| Q |
1 |
tcaggtcgggtctggtgtatgtgtcaatgcttcataggttatacttatattgtgtcggtgcttcgtaggttatactagacacaatcttgaatgactagta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
55670424 |
tcaggtcgggtctggtgtatgtgtcaatgcttcataggttatacttatattgtgtcggtgcttcgtaggttatactagacacaatcttgagtgactagta |
55670523 |
T |
|
| Q |
101 |
aaaatcttcctcacctgtgatctaaaattcatgataggagtattcattttgtagccataaaatggacaaacagatattgaaactgaatcattaatctgac |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55670524 |
aaaatcttcctcacctgtggtctaaaattcatgataggagtattcattttgtagccataaaatggacaaacagatattgaaactgaatcattaatctgac |
55670623 |
T |
|
| Q |
201 |
gttaagcagaagcaattgaaggagtaattaataaatttacctccaacagaactaatgtcaatacttccaagaagttgttccttccacttcctcaagctct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55670624 |
gttaagcagaagcaattgaaggagtaattaataaatttacctccaacagaactaatgtcaatacttccaagaagttgttccttccacttcctcaagctct |
55670723 |
T |
|
| Q |
301 |
catcatcctaaggactcaggaagaaaacaattaacaaatgcataaatgattaattaacatgagaacaaagcatggatatttttcgaagnnnnnnnnnnnn |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55670724 |
catcatcctaaggactcaggaagaaaacaattaacaaatgcataaatgattaattaacatgagaacaaagcatggatatttttcgaagaaaaaaacatca |
55670823 |
T |
|
| Q |
401 |
nnnnnnnnngtgaaccttatccttttcgagttgctctttcaaagtgaattgaggaccaacatcaatcttcttatcaacgtcatcatcatcgtcctcagtg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55670824 |
aaaagaaaagtgaaccttatccttttcgagttgctctttcaaagtgaattgaggaccaacatcaatcttcttatcaacgtcatcatcatcgtcctcagtg |
55670923 |
T |
|
| Q |
501 |
gcagcaacagaactgtcactcatgtgcctactgagttgccccttccctttttcattgccacttccttcatgat |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55670924 |
gcagcaacagaactgtcactcatgtgcctactgagttgccccttccctttttcattgccacttccttcatgat |
55670996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 9215817 - 9215891
Alignment:
| Q |
237 |
ttacctccaacagaactaatgtcaatacttccaagaagttgttccttccacttcctcaagctctcatcatcctaa |
311 |
Q |
| |
|
||||||||||||| | | ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9215817 |
ttacctccaacagcattgatgtcaacacttccaagaagctgttccttccacctcctcaagctctcatcatcctaa |
9215891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 525
Target Start/End: Original strand, 9215976 - 9216088
Alignment:
| Q |
413 |
aaccttatccttttcgagttgctctttcaaagtgaattgaggaccaacatcaatcttcttatcaacgtcatcatcatcgtcctcagtggcagcaacagaa |
512 |
Q |
| |
|
||||||||||||||| ||||| || || || || |||| ||||| | ||||||||| |||| | |||||||| || |||||||| |||||||||||| |
|
|
| T |
9215976 |
aaccttatccttttcaagttgttcctttaaggtacattgtggacccaactcaatcttcctatcttcatcatcatcttcctcctcagtagcagcaacagaa |
9216075 |
T |
|
| Q |
513 |
ctgtcactcatgt |
525 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
9216076 |
ctctcactcatgt |
9216088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University