View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_low_31 (Length: 227)
Name: NF6700_low_31
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 2435544 - 2435769
Alignment:
| Q |
2 |
caaattttctttaaaagctttaacgtcgttcatgttcaagaaaattcgaaccaaaatcatgattgaactaaaaaa-gagttatgttatcttatctaagat |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| || |||||||||||||||||| || |
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| T |
2435544 |
caaattctctttaaaagctttaacgtcgttcatgtccaagaaaattcaaaccaaaatcatgattaaactaaaaaaagacttatgttatcttatctaatat |
2435643 |
T |
|
| Q |
101 |
gatctaactctaattttaagtagagaaaattgttttgtttaaaaaataaagcagagagaatcgcattcgtacctcgtaataaaacaagtaacatgcggcg |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
2435644 |
gatctaactcaaattttaagtagagaaaattgttttgtttaaaaaataaagcagagagaatcgtattcgtacctgataataaaacaagtaacatgcggcg |
2435743 |
T |
|
| Q |
201 |
tcggtgagtgtcaatcaaccaacctc |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
2435744 |
tcggtgagtgtcaatcaaccaacctc |
2435769 |
T |
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