View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_low_32 (Length: 219)
Name: NF6700_low_32
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 9299145 - 9298946
Alignment:
| Q |
1 |
catcaagcaaccttaattctatcaattccttctgcatgtcagaaattgcattttctttctcttgaagcaaagcttttgaaactctggactcagatagttc |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9299145 |
catcaagcaaccttaattctatcaactccttctgcatgtcagaaattgcattttctttctcttgaagcaaagcttttgaaactctggactcagatagttc |
9299046 |
T |
|
| Q |
101 |
cttaactaattgctcatacaacaaagattgagctttatagcattgctgaagttccatttccaaattctcttcattctctttccactcaaaatccttcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9299045 |
cttaactaattgctcatacaacaaagattgagctttatagcattgctgaagttccatttccaaattctcttcattctctttccactcaaaatccttcaat |
9298946 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 9301662 - 9301512
Alignment:
| Q |
1 |
catcaagcaaccttaattctatcaattccttctgcatgtcagaaattgcattttctttctcttgaagcaaagcttttgaaactctggactcagatagttc |
100 |
Q |
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|||||||||||||||| ||| |||| |||| |||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
9301662 |
catcaagcaaccttaactctgtcaactcct---gcatatcagcaattgcattttctttctcttgaagcaaagcttttgaagctctggactcggatagttc |
9301566 |
T |
|
| Q |
101 |
cttaactaattgctcatacaacaaagattgagctttatagcattgctgaagttc |
154 |
Q |
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| T |
9301565 |
catagctaagtggtcagtcatctgagattgagctttatagcattgctgaagttc |
9301512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 9301504 - 9301412
Alignment:
| Q |
108 |
aattgctcatacaacaaagattgagctttatagcattgctgaagttccatttccaaattctcttcattctctttccactcaaaatccttcaat |
200 |
Q |
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| T |
9301504 |
aattgctcagacaactgagattgagctttatagcattgctgaagttccacttccaaattctctgctttctctttccactcaaaacccttcaat |
9301412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 43188226 - 43188424
Alignment:
| Q |
1 |
catcaagcaaccttaattctatcaattccttctgcatgtcagaaattgcattttctttctcttgaagcaaagcttttgaaactctggactcagatagttc |
100 |
Q |
| |
|
||||||||||||| |||||| |||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| ||||||| || ||| |
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| T |
43188226 |
catcaagcaacctcaattctgtcaactccttctgcatatcagaaatcacattttctttctcttgaagcgaagcttttgaaactctagactcagctacttc |
43188325 |
T |
|
| Q |
101 |
cttaactaattgctcatacaacaaagattgagctttatagcattgctgaagttccatttccaaattctcttcattctctttccactcaaaatccttcaa |
199 |
Q |
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| ||| | |||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||||||| |
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| T |
43188326 |
cacaacaagttgctcggataaccgagattgagctttatagcattgctgaagttccacttccaaattctctgctttctctttccactcaaaacccttcaa |
43188424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 1116312 - 1116136
Alignment:
| Q |
15 |
aattctatcaattccttctgcatgtcagaaattgcattttctttctcttgaagcaaagcttttgaaactctggactcagatagttccttaactaattgct |
114 |
Q |
| |
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|||||| |||| ||||||| ||| |||||||| |||| |||||||||||||||| |||||||||||||||| ||| ||| || |||| ||| | ||||| |
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| T |
1116312 |
aattctgtcaactccttctacatatcagaaatcgcatattctttctcttgaagcgaagcttttgaaactctagacgcagctacttccacaacaagttgct |
1116213 |
T |
|
| Q |
115 |
catacaacaaagattgagctttatagcattgctgaagttccatttccaaattctcttcattctctttccactcaaaa |
191 |
Q |
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| | |||| |||||||||||||||||||||||||||||||| |||||| |||||| | |||||||||||||||||| |
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| T |
1116212 |
cggataacagagattgagctttatagcattgctgaagttccacttccaagttctctgctttctctttccactcaaaa |
1116136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 34317622 - 34317680
Alignment:
| Q |
126 |
gattgagctttatagcattgctgaagttccatttccaaattctcttcattctctttcca |
184 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||| | ||||| | ||||||||||| |
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| T |
34317622 |
gattgagctttgtagcattgctgaagttccatttccagactctctgctttctctttcca |
34317680 |
T |
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