View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_low_5 (Length: 510)
Name: NF6700_low_5
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 495
Target Start/End: Complemental strand, 35722142 - 35721666
Alignment:
| Q |
19 |
agtactagtaaacatgccattaacattaacattaccattaccattaccaataccaaaatctttgttttctgataagttattcatcatattctgttgtaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35722142 |
agtactagtaaacatgccattaacattaacattaccattaccattaccaataccaaaatctttgttttctgataagttattcatcatattctgttgtaga |
35722043 |
T |
|
| Q |
119 |
agcaaagatggtggatgaattagagcttgatatagagatgaaggaatgcttttgtgatcaccaacttgaagaggagtttgaattgccatgtggctattca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35722042 |
agcaaagatggtggatgaattagagcttgatatagagatgaaggaatgcttttgtgatcaccaacttgaagaggagtttgaattgccatgttgctattca |
35721943 |
T |
|
| Q |
219 |
tatttgtaatagaggtggtgcaagtagtactagtagtagttatggtggtggaagaagtaactggtgtggttggtttcttgatcctcttattctttctgcc |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35721942 |
tatttgtaatagaggtggtgcaagtagtactagtagtagttatggtggtggaagaagtaactggtgtggttggtttcttgatcctcttattctttctgcc |
35721843 |
T |
|
| Q |
319 |
accaccaacaggaacattgcgtagagttccacctttagtccagtgtcttttacaagctctacagaaatgacgaggttgagacttgttgtaattgttgtag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35721842 |
accaccaacaggaacattgcgtagagttccacctttagtccagtgtcttttacaagctctacagaagtgacgaggttgagacttgttgtaattgttgtag |
35721743 |
T |
|
| Q |
419 |
taacaaaactttgtgtttgttgaatcacatcttggacaattcaaatgttctgcttgttgctgactttgttgctgttg |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35721742 |
taacaaaactttgtgtttgttgaatcacatcttggacaattcaaatgttctgcttgttgctgactttgttgctgttg |
35721666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 456
Target Start/End: Original strand, 22483488 - 22483539
Alignment:
| Q |
405 |
tgtaattgttgtagtaacaaaactttgtgtttgttgaatcacatcttggaca |
456 |
Q |
| |
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|||||||||||||||||||||| || ||||| |||| |||||||||||||| |
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| T |
22483488 |
tgtaattgttgtagtaacaaaatttggtgttgtttgagtcacatcttggaca |
22483539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 302 - 461
Target Start/End: Complemental strand, 3591994 - 3591835
Alignment:
| Q |
302 |
ctcttattctttctgccaccaccaacaggaacattgcgtagagttccacctttagtccagtgtcttttacaagctctacagaaatgacgaggttgagact |
401 |
Q |
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||||||||||| || ||||||||||||||||||| | |||||| |||||||||||||| ||||| |||||||| || |||||||| ||||||||||||| |
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| T |
3591994 |
ctcttattcttcctaacaccaccaacaggaacattccttagagtaccacctttagtccaatgtctcttacaagccctgcagaaatggcgaggttgagact |
3591895 |
T |
|
| Q |
402 |
tgttgtaattgttgtagtaacaaaactttgtgtttgttgaatcacatcttggacaattca |
461 |
Q |
| |
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|||| || ||||||||||||||||| || || ||||| || ||||||||||||||||||| |
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| T |
3591894 |
tgttatagttgttgtagtaacaaaatttggtatttgtagagtcacatcttggacaattca |
3591835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 456
Target Start/End: Original strand, 3945865 - 3946004
Alignment:
| Q |
317 |
ccaccaccaacaggaacattgcgtagagttccacctttagtccagtgtcttttacaagctctacagaaatgacgaggttgagacttgttgtaattgttgt |
416 |
Q |
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|||||||||||||||||||| | ||||| |||||| | ||||| | | ||| |||||| |||||||||| | ||||| ||| |||| ||||||| |
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| T |
3945865 |
ccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgt |
3945964 |
T |
|
| Q |
417 |
agtaacaaaactttgtgtttgttgaatcacatcttggaca |
456 |
Q |
| |
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||||||||||||||||||||| ||| ||||| | |||||| |
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| T |
3945965 |
agtaacaaaactttgtgtttgatgagtcacaacgtggaca |
3946004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 456
Target Start/End: Original strand, 33740165 - 33740250
Alignment:
| Q |
371 |
caagctctacagaaatgacgaggttgagacttgttgtaattgttgtagtaacaaaactttgtgtttgttgaatcacatcttggaca |
456 |
Q |
| |
|
|||||| | ||||||||||| || ||||| | |||||| |||||||||||||||||||| ||||| ||||||||||| | |||||| |
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| T |
33740165 |
caagctttgcagaaatgacgtggctgagagtagttgtagttgttgtagtaacaaaacttagtgttggttgaatcacaacgtggaca |
33740250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 456
Target Start/End: Complemental strand, 28437361 - 28437310
Alignment:
| Q |
405 |
tgtaattgttgtagtaacaaaactttgtgtttgttgaatcacatcttggaca |
456 |
Q |
| |
|
|||| |||||||||||||| || |||||||||| ||||||||||||||||| |
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| T |
28437361 |
tgtagttgttgtagtaacagaattttgtgtttggagaatcacatcttggaca |
28437310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 456
Target Start/End: Complemental strand, 33823858 - 33823812
Alignment:
| Q |
410 |
ttgttgtagtaacaaaactttgtgtttgttgaatcacatcttggaca |
456 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| || ||||||||||| |
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| T |
33823858 |
ttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggaca |
33823812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 456
Target Start/End: Original strand, 8132117 - 8132169
Alignment:
| Q |
404 |
ttgtaattgttgtagtaacaaaactttgtgtttgttgaatcacatcttggaca |
456 |
Q |
| |
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||||| ||||||||||| || ||||||||||||||||| |||||||||||||| |
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| T |
8132117 |
ttgtagttgttgtagtagcagaactttgtgtttgttgattcacatcttggaca |
8132169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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