View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_low_6 (Length: 508)
Name: NF6700_low_6
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 206 - 372
Target Start/End: Complemental strand, 7234764 - 7234598
Alignment:
| Q |
206 |
gttatggtcttagagagaatccaaagaaaacttggagagtactcactgattcaactaatgaacaagagattcaagatccttttgatgttgttttggataa |
305 |
Q |
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| T |
7234764 |
gttatggtcttagagagaatccaaagaaaacttggagagtactcactgattcaactaatgaacaagagattcaagatccttttgatgttgttttggataa |
7234665 |
T |
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| Q |
306 |
attgtgtaaagaatgtggtaaagggtttcaatctatgaaagctttgtttggtcacatgaagtgtcat |
372 |
Q |
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| T |
7234664 |
attgtgtaaagaatgtggtaaagggtttcaatctatgaaagctttgtttggtcacatgaagtgtcat |
7234598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 7234950 - 7234863
Alignment:
| Q |
20 |
atcaagaagtgatgaaattgaaacatgtgtgcaaattctgcagaaaaagttttgcttctggtaaatcattaggtggtcacatgaggtc |
107 |
Q |
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| T |
7234950 |
atcaagaagtgatgaaattgaaacatgtgtgcaaattctgcagaaaaagttttgcttctggtaaatcattaggtggtcacatgaggtc |
7234863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 423 - 485
Target Start/End: Complemental strand, 7234550 - 7234488
Alignment:
| Q |
423 |
tgatgattctaatgcaactgttcttccaaaaagaaagagaagatccaaaagaaagttaagaac |
485 |
Q |
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| T |
7234550 |
tgatgattctaatgcaactgttcttccaaaaagaaagagaagatccaaaagaaagttaagaac |
7234488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 288 - 357
Target Start/End: Complemental strand, 11678901 - 11678832
Alignment:
| Q |
288 |
tgatgttgttttggataaattgtgtaaagaatgtggtaaagggtttcaatctatgaaagctttgtttggt |
357 |
Q |
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| T |
11678901 |
tgatgttgttttggacaaattgtgcaaagaatgtggtaagggttttcaatctcggaaagctttgtttggt |
11678832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 26365687 - 26365657
Alignment:
| Q |
38 |
tgaaacatgtgtgcaaattctgcagaaaaag |
68 |
Q |
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| T |
26365687 |
tgaaacatgtgtgcaaattctgcagaaaaag |
26365657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 30641726 - 30641756
Alignment:
| Q |
38 |
tgaaacatgtgtgcaaattctgcagaaaaag |
68 |
Q |
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| T |
30641726 |
tgaaacatgtgtgcaaattctgcagaaaaag |
30641756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 45405320 - 45405248
Alignment:
| Q |
35 |
aattgaaacatgtgtgcaaattctgcagaaaaagttttgcttctggtaaatcattaggtggtcacatgaggtc |
107 |
Q |
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| T |
45405320 |
aattcaaacatgcttgcaaattctgtagcaaaagctttccttgtggtagatctttaggaggtcacatgaggtc |
45405248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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