View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_low_7 (Length: 483)
Name: NF6700_low_7
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 22842291 - 22842563
Alignment:
| Q |
29 |
tttgaaatggtttagtaattgcactaaaattgaacctatgagtgtaaatctacctaatggaaatactatattagcaaactgtagaggacaagaaagacaa |
128 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| | ||||| | |||||||| || |||| | |
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| T |
22842291 |
tttgaaatggttcagtaattgtactaaaattgaacctatgagtgtaaatttaccaaatggaaatactacactagcacattgtagagggcagataagatta |
22842390 |
T |
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| Q |
129 |
tcacaggaattgagcatagataatgttctctatttgcctcaatttgatgtgaatcttatttctacttcaaagttgatcaaagagcaaaattgcattttgc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
22842391 |
tcacaggaattgagcatagataatgttctctatttgcctcaatttgctgtgaatcttatttctgcttcaaagttgattaaagagcaaaattgcattttgc |
22842490 |
T |
|
| Q |
229 |
actttgaagctaatgaatgtacaataccggaaaagaacagtttgaaaaagattggttcagctgaagaaagaca |
301 |
Q |
| |
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| |||||||||||||| |||||||||| |||||||||||||||||| |||||||||| ||||||||| ||||| |
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| T |
22842491 |
attttgaagctaatgagtgtacaatacaggaaaagaacagtttgaagaagattggtttagctgaagagagaca |
22842563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 29 - 301
Target Start/End: Complemental strand, 15525505 - 15525233
Alignment:
| Q |
29 |
tttgaaatggtttagtaattgcactaaaattgaacctatgagtgtaaatctacctaatggaaatactatattagcaaactgtagaggacaagaaagacaa |
128 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||||||||||| | | |||||||||| |||||||||| | |||| || |||||||||| |||| | |
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| T |
15525505 |
tttgaaatgttttagtaattgtactaaaattgaacctatgagtgttactttacctaatggtaatactatataatcaaattgcagaggacaagtaagatta |
15525406 |
T |
|
| Q |
129 |
tcacaggaattgagcatagataatgttctctatttgcctcaatttgatgtgaatcttatttctacttcaaagttgatcaaagagcaaaattgcattttgc |
228 |
Q |
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|||||||||| | ||||||||||||||| |||||| ||||||||| |||||||||||||| | || |||||||| |||||||||||||| || ||| |
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| T |
15525405 |
acacaggaatttaacatagataatgttctttatttgtctcaatttgctgtgaatcttatttttgtgtctaagttgatgaaagagcaaaattgtatgctgc |
15525306 |
T |
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| Q |
229 |
actttgaagctaatgaatgtacaataccggaaaagaacagtttgaaaaagattggttcagctgaagaaagaca |
301 |
Q |
| |
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| | |||||||||||||| || ||||| ||||| || |||||||| |||||||||| ||||||||| ||||| |
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| T |
15525305 |
aatctgaagctaatgaatatataatacaggaaaggagtagtttgaagaagattggtttagctgaagagagaca |
15525233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 299 - 470
Target Start/End: Original strand, 22842596 - 22842767
Alignment:
| Q |
299 |
acaatcaagtttcagtgtccaatgtgtttgcttcagcaaagtcaaataaagagcatgtgcttgatgggattctgtggcatctcaggcttggtcatctgtt |
398 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| |||||| ||||||||||||||||| | ||||| || ||||||||||||| ||||||||||| | |
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| T |
22842596 |
acaatcaagtttcagtgtctaatgtggctgctttagcaaattcaaataaagagcatgttccagatggaatcttgtggcatctcagacttggtcatctatc |
22842695 |
T |
|
| Q |
399 |
taaggatagaatgatgtgtatgagtaagctatatagctatgtttctactagtccacacactgcttgtgatgt |
470 |
Q |
| |
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|| ||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22842696 |
aaaagatagaatgatgtgtatgaataagctgtatagctatatttctactagtccacacactgcttgtgatgt |
22842767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 299 - 466
Target Start/End: Complemental strand, 15525200 - 15525033
Alignment:
| Q |
299 |
acaatcaagtttcagtgtccaatgtgtttgcttcagcaaagtcaaataaagagcatgtgcttgatgggattctgtggcatctcaggcttggtcatctgtt |
398 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||| ||| ||| |||||||||| ||| |||||| || |||||||||| |||||| || |||||| |
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| T |
15525200 |
acaatcaaggttcagtgtccagtgtgtctgcttcagaaaaatcacataaagagcacatgcctgatggagttttgtggcatcttaggcttagtaatctgtc |
15525101 |
T |
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| Q |
399 |
taaggatagaatgatgtgtatgagtaagctatatagctatgtttctactagtccacacactgcttgtg |
466 |
Q |
| |
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||| |||||||| ||||| |||| |||| | ||||||||||||||| |||||| |||||||||||||| |
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| T |
15525100 |
taaagatagaataatgtgcatgaataagttgtatagctatgtttcttctagtcaacacactgcttgtg |
15525033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 14233797 - 14234069
Alignment:
| Q |
29 |
tttgaaatggtttagtaattgcactaaaattgaacctatgagtgtaaatctacctaatggaaatactatattagcaaactgtagaggacaagaaagacaa |
128 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | ||||| | |||||||| || |||| | |
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| T |
14233797 |
tttgaaatggttcagtaattgcactaaaattgaacctatgagtgtaaatttaccaaatggaaatactacactagcacattgtagagggcagataagatta |
14233896 |
T |
|
| Q |
129 |
tcacaggaattgagcatagataatgttctctatttgcctcaatttgatgtgaatcttatttctacttcaaagttgatcaaagagcaaaattgcattttgc |
228 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
14233897 |
tcacaggaattaagcatagataatgttctctatttgtctcaatttgctgtgaatcttatttctgcttcaaagttgattaaagagcaaaattgcattttgc |
14233996 |
T |
|
| Q |
229 |
actttgaagctaatgaatgtacaataccggaaaagaacagtttgaaaaagattggttcagctgaagaaagaca |
301 |
Q |
| |
|
| |||||||||||||| |||| ||||| |||||||||||||||||| |||||||||| ||||||||| ||||| |
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| T |
14233997 |
attttgaagctaatgagtgtataatacaggaaaagaacagtttgaagaagattggtttagctgaagagagaca |
14234069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 299 - 470
Target Start/End: Original strand, 14234102 - 14234273
Alignment:
| Q |
299 |
acaatcaagtttcagtgtccaatgtgtttgcttcagcaaagtcaaataaagagcatgtgcttgatgggattctgtggcatctcaggcttggtcatctgtt |
398 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||| | ||||| || ||||||||||||| ||||||||||| | |
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| T |
14234102 |
acaatcaagtttcagtgtctaatgtggctgcttcagcaaattcaaataaagagcatgttccagatggaatcttgtggcatctcagacttggtcatctatc |
14234201 |
T |
|
| Q |
399 |
taaggatagaatgatgtgtatgagtaagctatatagctatgtttctactagtccacacactgcttgtgatgt |
470 |
Q |
| |
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|| ||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14234202 |
aaaagatagaatgatgtgtatgaataagctgtatagctatatttctactagtccacacactgcttgtgatgt |
14234273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 301
Target Start/End: Original strand, 15852916 - 15853076
Alignment:
| Q |
141 |
agcatagataatgttctctatttgcctcaatttgatgtgaatcttatttctacttcaaagttgatcaaagagcaaaattgcattttgcactttgaagcta |
240 |
Q |
| |
|
||||||||||||||||| ||| | || ||||||| ||||||||||||||| || |||||| |||||||||||||||| |||||| ||||| ||| |
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| T |
15852916 |
agcatagataatgttctttatcttccacaatttgcagtgaatcttatttctgtatccaagttgtgtaaagagcaaaattgcactttgcaatttgaggctg |
15853015 |
T |
|
| Q |
241 |
atgaatgtacaataccggaaaagaacagtttgaaaaagattggttcagctgaagaaagaca |
301 |
Q |
| |
|
|| ||| |||| ||||| ||||| ||||| |||||||||| |||| |||| ||||| |
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|
| T |
15853016 |
atacttgtgtaatataggaaaggaacaatttgaggaagattggtttagctaaagagagaca |
15853076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 15852804 - 15852865
Alignment:
| Q |
29 |
tttgaaatggtttagtaattgcactaaaattgaacctatgagtgtaaatctacctaatggaa |
90 |
Q |
| |
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|||||| ||||||| || || || ||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
15852804 |
tttgaattggtttactagttacaataaaattgaacctattagtgtaaatctacctgatggaa |
15852865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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