View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6700_low_8 (Length: 455)
Name: NF6700_low_8
Description: NF6700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6700_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 15 - 436
Target Start/End: Complemental strand, 36287837 - 36287416
Alignment:
| Q |
15 |
catcagcatagttgttagactagttgaaatataaaatgaaaagtgttccaccttgttaattaactgttttattcgccaccataatcgaacaagttgtgtt |
114 |
Q |
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| T |
36287837 |
catcagcatagttgttagactagttgaaatataaaatgaaaaatgttccaccttgttaattaactgttttattcgccaccataatctaacaagttgtgat |
36287738 |
T |
|
| Q |
115 |
aactttttgtaactagttgaatattattgaatagtatgaactttatactataaagtagtttagtggagggggatattttcctttccaacggtgtacataa |
214 |
Q |
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| T |
36287737 |
aactttttgtaactagttgaatattattgaatagtataaactttatactataaagtagtttagtggagggggatattttcctttccaacggtgtacataa |
36287638 |
T |
|
| Q |
215 |
aacctggttctggttcttcaattattatctttctatggaggcggctttcttgatatacaagtttgactgcgataaaaaataattaaaatatcaagtatat |
314 |
Q |
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| T |
36287637 |
aacctggttctggttcttcaattattatctttctatggaggcggctttcttgatatacaagtttgactgcgataaaaaataattaaaatatcaagtatat |
36287538 |
T |
|
| Q |
315 |
cttgtaattttgtgaaatattgaacaagaaaataataaataatcatcttgtacagtaaagattcaagagttgagaaagaggagaaagcgagaaagaagaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36287537 |
cttgtaattttgtgaaatattgaacaagaaaataataaataaacatcttgtacagtaaagattcaagagttgagaaagaggagaaaccgagaaagaagaa |
36287438 |
T |
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| Q |
415 |
taatcataaaataggaaatact |
436 |
Q |
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| T |
36287437 |
taatcataaaataggaaatact |
36287416 |
T |
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