View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6701_high_1 (Length: 700)

Name: NF6701_high_1
Description: NF6701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6701_high_1
NF6701_high_1
[»] chr1 (1 HSPs)
chr1 (18-690)||(44878873-44879545)


Alignment Details
Target: chr1 (Bit Score: 653; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 18 - 690
Target Start/End: Original strand, 44878873 - 44879545
Alignment:
Q  18 gtattatcctatttctgcattgctcatgaaagtatgcaatcccctgtgcagtatttatggctatatcgaaacgagtttgccaatctagcaatctatctcg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878873 gtattatcctatttctgcattgctcatgaaagtatgcaatcccctgtgcagtatttatggctatatcgaaacgagtttgccaatctagcaatctatctcg 44878972  T
Q  118 ccctcgatatgaagggaagatccatttatccaatgaaccattcttcatgaactcgtacactagaagcctgccaaacaaatattactcaagccaattaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878973 ccctcgatatgaagggaagatccatttatccaatgaaccattcttcatgaactcgtacactagaagcctgccaaacaaatattactcaagccaattaaac 44879072  T
Q  218 cattgagattttaagtcttatgaatgagttaaatccaattcaaacaatattcgcttgatcgggtaaagaatgataaaattgtaaatatagtacacctgtg 317  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44879073 cattgagattttaagtcttatgaatgacttaaatccaattaaaacaatattcgctggatcgggtaaagaatgataaaattgtaaatatagtacacctgtg 44879172  T
Q  318 tggtccctcagaacaaaaaccgcatagacgaaccaaattcatatgatgcattgagccaattgtgtttacttcagttataaactctttctctccatgaggc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879173 tggtccctcagaacaaaaaccgcatagacgaaccaaattcatatgatgcattgagccaattgtgtttacttcagttataaactctttctctccatgaggc 44879272  T
Q  418 aatatcttgtcaagtttcttcactgcaattagagtaccatctccgaggcttcctttatacacacttccaaacccacctacaaaatatataaactgttggc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44879273 aatatcttgtcaagtttcttcactgcaattagagtaccatctccgaggcttcctttatacacacttccaaatccacctacaaaatatataaactgttggc 44879372  T
Q  518 aacaaattttactgaaagcaaaacttctctccctgtgacgcatcaatcaaacagtccctgcattaaattcattcattagacaacatcgtgtgacacgtta 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879373 aacaaattttactgaaagcaaaacttctctccctgtgacgcatcaatcaaacagtccctgcattaaattcattcattagacaacatcgtgtgacacgtta 44879472  T
Q  618 aatcaatatgtgacgatccacatggacttcacgtcaaaatcacatctccacgcacaaaattgactgtcataat 690  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879473 aatgaatatgtgacgatccacatggacttcacgtcaaaatcacatctccacgcacaaaattgactgtcataat 44879545  T

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