View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6701_high_12 (Length: 274)
Name: NF6701_high_12
Description: NF6701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6701_high_12 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 248896 - 249152
Alignment:
| Q |
18 |
ctatcaaggttgcttggcagagagacacaatctgtgaattaccatccatggcaattttacagttagttccatccactgatggtatatctaatttgtatgc |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
248896 |
ctatcaagcttgcttggcagagagacacaatctgtgaattaccatccatggcaattttacagttagttccatccactgatggtatatctaatttgtatgc |
248995 |
T |
|
| Q |
118 |
tccctctctgtctgttgttctgttcactgagaaatttatctgttcgttggttcttggtgagcttgctctaaatctgcactctatatgaacgtcaacacct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
248996 |
tccctctctgtctgttgttctgttcactgagaaatttatctgttcgttggttcttggtgagcttgctctaaatctgcactctatatgaacgtcaacacct |
249095 |
T |
|
| Q |
218 |
gacatatataatcaattcattcatttgcttataatctatatataaagttcagacata |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
249096 |
gacatatataatcaattcattcatttgcttataatctatatataaagttcagacata |
249152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University