View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6701_high_4 (Length: 505)

Name: NF6701_high_4
Description: NF6701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6701_high_4
NF6701_high_4
[»] chr3 (2 HSPs)
chr3 (254-491)||(1653990-1654227)
chr3 (16-192)||(1653750-1653926)
[»] chr1 (3 HSPs)
chr1 (258-396)||(26841590-26841725)
chr1 (100-190)||(26841797-26841887)
chr1 (438-491)||(26841435-26841489)
[»] chr8 (3 HSPs)
chr8 (258-396)||(15049643-15049780)
chr8 (100-190)||(15049862-15049952)
chr8 (445-489)||(15049490-15049535)
[»] scaffold0127 (1 HSPs)
scaffold0127 (445-486)||(22334-22376)
[»] chr6 (1 HSPs)
chr6 (445-486)||(5745492-5745534)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 9e-96; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 254 - 491
Target Start/End: Original strand, 1653990 - 1654227
Alignment:
Q  254 aaataacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctaaataccaaagaaacacaccatggaaaccatacataggagttga 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||||||||||||| ||||| |||    
T  1653990 aaataacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctgaacaccactcaaacacaccatggaaaccatacagaggagatga 1654089  T
Q  354 agaaaccaccacaaatcaccttaaaaaccaccaccaccgcaagttacaatctgaggaaacccagccgtcgacgcacccaccagagaccagtggtgatgcg 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||  | ||||||||||||||||||| |||||||||    
T  1654090 agaaaccaccacaaatcaccttaaaaaccaccaccaccgcaagttatgatctgaggaaacccagccgctggcgcacccaccagagaccagaggtgatgcg 1654189  T
Q  454 gatggttttccatcttcgcaccaccagccaccaccgtt 491  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  1654190 gatggttttccatcttcgcaccaccacccaccgccgtt 1654227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 1653750 - 1653926
Alignment:
Q  16 gacatcacaacacaaacagaaaacaactacacgacattaaaagaacaaaacagtccccctggagaagtcggaacagctaacagaaacacacactacacaa 115  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  1653750 gacatcacaacacaaacagaaaacaactatacgacattaaaggaacaaaacagtccccccggagaagtcggaacagctgacagaaacacacactacacaa 1653849  T
Q  116 ccgcaaccacccacctcttacctgctagtgaaccattaacgaccacccccataacgacctttcactggcgcaacaga 192  Q
    || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1653850 ccacaaccacccacctcttacccgctagtgaaccattaacgaccacccccataacgacctctcactggcgcaacaga 1653926  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 396
Target Start/End: Complemental strand, 26841725 - 26841590
Alignment:
Q  258 aacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctaaataccaaagaaacacaccatggaaaccatacataggagttgaagaa 357  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||   || ||||  |||||| |||||| ||||| |||| ||||| ||||||     
T  26841725 aacttaacccaccaaaaactatctcgaaaacagccataaaaggaacatat---aacaccactgaaacaaaccatgaaaaccgtacagaggagatgaagag 26841629  T
Q  358 accaccacaaatcaccttaaaaaccaccaccaccgcaag 396  Q
    ||||||| ||| | |||| ||||| ||||| ||||||||    
T  26841628 accaccagaaaccgccttgaaaacaaccacaaccgcaag 26841590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 26841887 - 26841797
Alignment:
Q  100 aacacacactacacaaccgcaaccacccacctcttacctgctagtgaaccattaacgaccacccccataacgacctttcactggcgcaaca 190  Q
    ||||||||| ||||||| |||||||||||||| |  || ||||||||||||||||| ||||||| ||||||||||| ||||||| ||||||    
T  26841887 aacacacaccacacaactgcaaccacccacctttggccggctagtgaaccattaaccaccaccctcataacgacctctcactggtgcaaca 26841797  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 491
Target Start/End: Complemental strand, 26841489 - 26841435
Alignment:
Q  438 gaccagtggtgatgcggatggtt-ttccatcttcgcaccaccagccaccaccgtt 491  Q
    ||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||    
T  26841489 gaccagtggtgatgcggatggctgttccatattcgcaccatcagccaccaccgtt 26841435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 396
Target Start/End: Complemental strand, 15049780 - 15049643
Alignment:
Q  258 aacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctaaataccaaagaaacacaccatggaaaccatacataggagttgaagaa 357  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||||||| || ||||   ||||| |||||||||| | || | ||||| |||||||    
T  15049780 aacttaacccaccaaaaactagctcgaaaatagccataaatggaacatatctgaaaaccactaaaacaaaccatggaaa-cgtatagaggagatgaagaa 15049682  T
Q  358 accaccacaaatcaccttaaaaaccaccaccaccgcaag 396  Q
    |||| || ||| |||||| ||||||||||| ||| ||||    
T  15049681 accatcaaaaaccaccttgaaaaccaccacaaccacaag 15049643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 15049952 - 15049862
Alignment:
Q  100 aacacacactacacaaccgcaaccacccacctcttacctgctagtgaaccattaacgaccacccccataacgacctttcactggcgcaaca 190  Q
    ||||||||| ||| |||||||||||| ||||| |  ||  |||||||||||||||| ||||||||||||||||||| |||| | |||||||    
T  15049952 aacacacaccacataaccgcaaccacacacctatggccgactagtgaaccattaaccaccacccccataacgacctctcaccgacgcaaca 15049862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 489
Target Start/End: Complemental strand, 15049535 - 15049490
Alignment:
Q  445 ggtgatgcggatggtt-ttccatcttcgcaccaccagccaccaccg 489  Q
    |||||||||||||||| |||||||||||||||  ||||||||||||    
T  15049535 ggtgatgcggatggttgttccatcttcgcaccttcagccaccaccg 15049490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 486
Target Start/End: Original strand, 22334 - 22376
Alignment:
Q  445 ggtgatgcggatggtt-ttccatcttcgcaccaccagccacca 486  Q
    |||||||||||||| | ||||||||||||||||||||||||||    
T  22334 ggtgatgcggatggatgttccatcttcgcaccaccagccacca 22376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 486
Target Start/End: Complemental strand, 5745534 - 5745492
Alignment:
Q  445 ggtgatgcggatggtt-ttccatcttcgcaccaccagccacca 486  Q
    |||||||||||||| | ||||||||||||||||||||||||||    
T  5745534 ggtgatgcggatggatgttccatcttcgcaccaccagccacca 5745492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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