View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6701_low_10 (Length: 369)

Name: NF6701_low_10
Description: NF6701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6701_low_10
NF6701_low_10
[»] chr7 (4 HSPs)
chr7 (35-351)||(13750118-13750434)
chr7 (45-159)||(40739077-40739191)
chr7 (168-243)||(43006678-43006753)
chr7 (168-251)||(22745382-22745465)
[»] chr4 (5 HSPs)
chr4 (207-350)||(56234643-56234786)
chr4 (38-97)||(56234781-56234840)
chr4 (78-162)||(7989141-7989225)
chr4 (168-243)||(1273167-1273242)
chr4 (168-251)||(55953107-55953190)
[»] chr6 (2 HSPs)
chr6 (45-159)||(29466282-29466396)
chr6 (168-251)||(8411418-8411501)
[»] chr1 (2 HSPs)
chr1 (45-159)||(6242139-6242253)
chr1 (43-82)||(45228698-45228737)
[»] chr8 (2 HSPs)
chr8 (43-94)||(26365839-26365890)
chr8 (256-337)||(44189679-44189752)
[»] chr2 (2 HSPs)
chr2 (35-108)||(27948827-27948905)
chr2 (78-159)||(3604422-3604503)
[»] chr5 (1 HSPs)
chr5 (168-220)||(26403953-26404005)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 35 - 351
Target Start/End: Complemental strand, 13750434 - 13750118
Alignment:
Q  35 atcatcttcatcaaattatgcttttaaaaccccaatattcatgtcttcttctctcaaaaacccattaattcgatggtattttatgaattttcatcttgga 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13750434 atcatcttcatcaaattatgcttttaaaaccccaatattcatgtcttcttctctcaaaaacccattagttcgatggtattttatgaattttcatcttgga 13750335  T
Q  135 tatttggttcttccctcatcatgttattccagtaaaattcatcattacaactccataaaaaatcgtataatcaaacccttgaatctagaataaaaaccac 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13750334 tatttggttcttccctcatcatgttattccagtaaaattcatcattacaactccataaaaaatcgtataatcaaacccttgaatctagaataaacaccac 13750235  T
Q  235 catcatcatctacctcaatttatcctttaattttgtagagtgaatgccaacagccaacaacttatatgagaaattatgcggggctactccagaagttgca 334  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13750234 catcatcatctaactcaatttatcctttaattttgtagagtgaatgccaacggccaacaacttatatgagaaattatgcggggctactccagaagttgca 13750135  T
Q  335 tcttctccagttcaaaa 351  Q
    |||||||||||||||||    
T  13750134 tcttctccagttcaaaa 13750118  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 40739077 - 40739191
Alignment:
Q  45 tcaaattatgcttttaaaaccccaatattcatgtcttcttctctcaaaaacccattaattcgatggtattttatgaattttcatcttggatatttggttc 144  Q
    |||||||||| |||||||| |||||| ||||||||||||||||||||||| |||||| |||||||    ||||||||||| |||||||||| |||| |||    
T  40739077 tcaaattatgtttttaaaaacccaatcttcatgtcttcttctctcaaaaaaccattatttcgatgcccatttatgaatttccatcttggatctttgcttc 40739176  T
Q  145 ttccctcatcatgtt 159  Q
    |||| ||||||||||    
T  40739177 ttccttcatcatgtt 40739191  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 43006678 - 43006753
Alignment:
Q  168 aaaattcatcattacaactccataaaaaatcgtataatcaaacccttgaatctagaataaaaaccaccatcatcat 243  Q
    ||||||||||||| ||||| ||||||||||| |||||||||| |||| ||||| ||||||| ||||||| ||||||    
T  43006678 aaaattcatcatttcaacttcataaaaaatcatataatcaaatccttaaatctggaataaacaccaccaccatcat 43006753  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 22745382 - 22745465
Alignment:
Q  168 aaaattcatcattacaactccataaaaaatcgtataatcaaacccttgaatctagaataaaaaccaccatcatcatctacctca 251  Q
    ||||||||||||| ||||| ||| |||||   |||||||||| ||||  || | ||||||| ||||||||||||||||| ||||    
T  22745382 aaaattcatcatttcaacttcattaaaaacgatataatcaaatccttagatatggaataaacaccaccatcatcatctaactca 22745465  T

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Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 207 - 350
Target Start/End: Complemental strand, 56234786 - 56234643
Alignment:
Q  207 aaacccttgaatctagaataaaaaccaccatcatcatctacctcaatttatcctttaattttgtagagtgaatgccaacagccaacaacttatatgagaa 306  Q
    |||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  56234786 aaacccttgaatctagaataaacaccgccaccatcatctaactcaatttatcctttagttttgtagagtgaatgccaacggccaacaacttatatgagaa 56234687  T
Q  307 attatgcggggctactccagaagttgcatcttctccagttcaaa 350  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  56234686 attatgcggggctactccagaagttgcatcttctccacttcaaa 56234643  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 56234840 - 56234781
Alignment:
Q  38 atcttcatcaaattatgcttttaaaaccccaatattcatgtcttcttctctcaaaaaccc 97  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  56234840 atcttcatcaaattatgcttttaaaaccccaatcttcatgtcttctactctcaaaaaccc 56234781  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 7989225 - 7989141
Alignment:
Q  78 tcttcttctctcaaaaacccattaattcgatggtattttatgaattttcatcttggatatttggttcttccctcatcatgttatt 162  Q
    ||||||||||||||||||||||||||||| ||    |||||||||||||||||| ||| |||| ||||||| |||||||||||||    
T  7989225 tcttcttctctcaaaaacccattaattcggtgcccgtttatgaattttcatctttgatctttgcttcttccttcatcatgttatt 7989141  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 1273242 - 1273167
Alignment:
Q  168 aaaattcatcattacaactccataaaaaatcgtataatcaaacccttgaatctagaataaaaaccaccatcatcat 243  Q
    ||||||||||||| |||||  |||||||||| |||||||||| | || ||||| ||||||| ||||||| ||||||    
T  1273242 aaaattcatcatttcaactttataaaaaatcatataatcaaatctttaaatctggaataaacaccaccaccatcat 1273167  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 55953107 - 55953190
Alignment:
Q  168 aaaattcatcattacaactccataaaaaatcgtataatcaaacccttgaatctagaataaaaaccaccatcatcatctacctca 251  Q
    ||||||||||||| |||||  || ||||| | |||||||||| | || ||||| ||||||| ||||||| ||||||||| ||||    
T  55953107 aaaattcatcatttcaacttaatcaaaaaccatataatcaaatcattaaatctggaataaacaccaccaccatcatctaactca 55953190  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 29466282 - 29466396
Alignment:
Q  45 tcaaattatgcttttaaaaccccaatattcatgtcttcttctctcaaaaacccattaattcgatggtattttatgaattttcatcttggatatttggttc 144  Q
    |||||||||| |||||||| |||||| |||||| ||| |||||||||||| |||||| |||||||    ||||||||||| |||||||||| |||| |||    
T  29466282 tcaaattatgtttttaaaaacccaatcttcatgccttattctctcaaaaaaccattatttcgatgcccatttatgaatttccatcttggatctttgcttc 29466381  T
Q  145 ttccctcatcatgtt 159  Q
    |||| ||||||||||    
T  29466382 ttccttcatcatgtt 29466396  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 8411418 - 8411501
Alignment:
Q  168 aaaattcatcattacaactccataaaaaatcgtataatcaaacccttgaatctagaataaaaaccaccatcatcatctacctca 251  Q
    ||||||||||||| ||||| ||| |||||   |||||||||| ||||  || | ||||||| ||||||||||||||||| ||||    
T  8411418 aaaattcatcatttcaacttcattaaaaacgatataatcaaatccttagatatggaataaacaccaccatcatcatctaactca 8411501  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 6242253 - 6242139
Alignment:
Q  45 tcaaattatgcttttaaaaccccaatattcatgtcttcttctctcaaaaacccattaattcgatggtattttatgaattttcatcttggatatttggttc 144  Q
    |||||||||| |||||||| | |||| ||||||||||||||||||||||| |||||| |||||||    ||||||||||| |||||||||| |||| |||    
T  6242253 tcaaattatgtttttaaaaactcaatcttcatgtcttcttctctcaaaaaaccattatttcgatgcccatttatgaatttccatcttggatctttgcttc 6242154  T
Q  145 ttccctcatcatgtt 159  Q
    |||| || |||||||    
T  6242153 ttccttcgtcatgtt 6242139  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 45228698 - 45228737
Alignment:
Q  43 catcaaattatgcttttaaaaccccaatattcatgtcttc 82  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  45228698 catcaaattatgcttttaaaaccccaatcttcatgtcttc 45228737  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 26365890 - 26365839
Alignment:
Q  43 catcaaattatgcttttaaaaccccaatattcatgtcttcttctctcaaaaa 94  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26365890 catcaaattatgcttttaaaaccccaatcttcatgtcttcttctctcaaaaa 26365839  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 44189679 - 44189752
Alignment:
Q  256 atcctttaattttgtagagtgaatgccaacagccaacaacttatatgagaaattatgcggggctactccagaagttgcatct 337  Q
    |||||||| |||||||||||||||||||       |||||||||||| |||||| ||| ||||||||||||||| |||||||    
T  44189679 atcctttatttttgtagagtgaatgcca-------acaacttatatgtgaaattctgc-gggctactccagaagctgcatct 44189752  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 27948905 - 27948827
Alignment:
Q  35 atcatcttcatcaaattat----gctttt-aaaaccccaatattcatgtcttcttctctcaaaaacccattaattcgat 108  Q
    |||||||||||||||||||    |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  27948905 atcatcttcatcaaattatatatgctttttaaaaccccaatctttatgtcttcttctctcaaaaacccattaattcgat 27948827  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 3604503 - 3604422
Alignment:
Q  78 tcttcttctctcaaaaacccattaattcgatggtattttatgaattttcatcttggatatttggttcttccctcatcatgtt 159  Q
    ||||||||||||||||| |||||| |||||||    |||||||||||| ||||||||| |||| ||||||| ||||||||||    
T  3604503 tcttcttctctcaaaaaaccattatttcgatgcccatttatgaatttttatcttggatctttgcttcttccttcatcatgtt 3604422  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 26404005 - 26403953
Alignment:
Q  168 aaaattcatcattacaactccataaaaaatcgtataatcaaacccttgaatct 220  Q
    ||||||||||||| ||||| ||| ||||||| |||||||||| |||| |||||    
T  26404005 aaaattcatcatttcaacttcatcaaaaatcatataatcaaatccttaaatct 26403953  T

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