View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6701_low_11 (Length: 348)
Name: NF6701_low_11
Description: NF6701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6701_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 6185423 - 6185765
Alignment:
| Q |
1 |
tcgccttcaaccaccgtttcatctgtgtcctgattaggttgaagaattccacattcaaatgctatagcttttgcagtgaaaacattgtcacctattataa |
100 |
Q |
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| T |
6185423 |
tcgccttcaaccaccgtttcatctatgtcctgattaggttgaagaattccacattcaaatgctatagctttcgcagtgaaaacattgtcacctattataa |
6185522 |
T |
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| Q |
101 |
tcagaaataaagtttgccatcattttcgtatagactcgtatgtataaatagaggattttgtagtcaatatcgatcgaaagattaagttactgataaatga |
200 |
Q |
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| T |
6185523 |
tcagagataaagttcggcatcattttcatgtagacttgtatgtataaatagacgattttatattcgatat---tc-aaagatcaagttactcataaatga |
6185618 |
T |
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| Q |
201 |
gatattttagcaatacctgtgatcattttgacattcacaccagcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatccttaatgc |
300 |
Q |
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| T |
6185619 |
gatattatagtaatacctgtaatcattttgacattcacaccggcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatccttaatgc |
6185718 |
T |
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| Q |
301 |
cgacaagtcctaacaatgttaaatcattctcttttaccaccatcttg |
347 |
Q |
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| T |
6185719 |
cgacaagtcctaacaatgttaaatcattctcttttaccaccatcttg |
6185765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 192 - 347
Target Start/End: Original strand, 4236517 - 4236672
Alignment:
| Q |
192 |
gataaatgagatattttagcaatacctgtgatcattttgacattcacaccagcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggat |
291 |
Q |
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| T |
4236517 |
gataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttccactgtcgtcttcacccccgggcgacatggat |
4236616 |
T |
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| Q |
292 |
ccttaatgccgacaagtcctaacaatgttaaatcattctcttttaccaccatcttg |
347 |
Q |
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| T |
4236617 |
ccttaatgcctacaagtcctaacaatgttaaaccattgtcttttaccaccatcttg |
4236672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 4236299 - 4236391
Alignment:
| Q |
1 |
tcgccttcaaccaccgtttcatctgtgtcctgattaggttgaagaattccacattcaaatgctatagcttttgcagtgaaaacattgtcacct |
93 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236299 |
tcgccttcaaccactgtttcatccgtgtcctgattaggttgaagaattccacattcaaatgctatagcttttgcagtgaaaacattgtcacct |
4236391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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