View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6701_low_14 (Length: 283)
Name: NF6701_low_14
Description: NF6701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6701_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 42278226 - 42278480
Alignment:
| Q |
18 |
agttggcattaccaatatggaaagtcttgaggaagaataggttttaactacggttaaactgtggctaatgtgatatgttttaataaatacattgggcca- |
116 |
Q |
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| T |
42278226 |
agttggcactatcaatatggaaagtcttgaggaagaataggttttaactacggttaaactgtggctaatgtgatatgttttaataaatacattgggccat |
42278325 |
T |
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| Q |
117 |
---tcatatgccaattattttagataaaaaaaattactaatcc---nnnnnnnnnnnntcagtcaacattaagacttcatcacctacaagtcacaacaca |
210 |
Q |
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| T |
42278326 |
cattcatatgccaattattttagataaaaaaaattactaatccaaaaaaaaaaaaaaatcagtcaacattaagacttcatcacctacaagtcacaacaca |
42278425 |
T |
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| Q |
211 |
gctatgacttagcactgatcaatttcaaacaaaaaatgcttacttttgttacttt |
265 |
Q |
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| T |
42278426 |
gctatgacttagcactgatcaatttcacacaaaaaatgcttacttttgttacttt |
42278480 |
T |
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