View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6701_low_15 (Length: 282)
Name: NF6701_low_15
Description: NF6701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6701_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 37068322 - 37068073
Alignment:
| Q |
15 |
gctggtgctccataaggtccatcaattcgtagccttggcatcctacattttatttaaaattgagtttcactatgacgaaaaagaaagctatcctatcaat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
37068322 |
gctggtgctccataaggtccatcaattcgtagccttggcatcctacattttatttaaaattgagtttcactatgatgaagaagaaagctatcctatcaat |
37068223 |
T |
|
| Q |
115 |
ttcatagaaaaataattcacatacaccggtggtgtaaatat-ttttacaccttgaatcaatcataatggtcagatcattaaaaaggtttaactatacctt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37068222 |
ttcatagaaaaataattcacatacaccgttggtgtaaatattttttacaccttgaatcaatcataatggtcagatcattaaaaaggtttaactatacctt |
37068123 |
T |
|
| Q |
214 |
ggtaggcttgatttgcctggtaacatatcagctcttagaagaccactttg |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37068122 |
ggtaggcttgatttgcctggtaacatatcagctcttagaagaccactttg |
37068073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 46560906 - 46560943
Alignment:
| Q |
226 |
ttgcctggtaacatatcagctcttagaagaccactttg |
263 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46560906 |
ttgccttgtaacatatcagctcttagaagaccactttg |
46560943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University