View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6701_low_19 (Length: 249)

Name: NF6701_low_19
Description: NF6701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6701_low_19
NF6701_low_19
[»] chr2 (14 HSPs)
chr2 (1-166)||(5523685-5523852)
chr2 (168-240)||(34983277-34983354)
chr2 (166-240)||(6750086-6750165)
chr2 (163-240)||(22674820-22674902)
chr2 (167-235)||(12994975-12995039)
chr2 (166-240)||(38527173-38527252)
chr2 (199-240)||(41699221-41699262)
chr2 (165-199)||(1115164-1115198)
chr2 (166-199)||(1021196-1021229)
chr2 (166-199)||(2249580-2249613)
chr2 (166-199)||(28745620-28745653)
chr2 (166-199)||(32099928-32099961)
chr2 (166-199)||(36436308-36436341)
chr2 (138-166)||(19253652-19253680)
[»] chr8 (11 HSPs)
chr8 (166-240)||(24797134-24797213)
chr8 (166-240)||(21434842-21434918)
chr8 (166-240)||(9830607-9830686)
chr8 (166-240)||(41838035-41838114)
chr8 (165-240)||(7012336-7012416)
chr8 (206-240)||(36060402-36060436)
chr8 (206-240)||(38567174-38567208)
chr8 (166-199)||(34934382-34934415)
chr8 (167-199)||(1183823-1183855)
chr8 (138-166)||(31974740-31974768)
chr8 (200-240)||(42556174-42556214)
[»] chr5 (10 HSPs)
chr5 (162-240)||(16823126-16823209)
chr5 (166-240)||(41084661-41084738)
chr5 (166-233)||(25701507-25701579)
chr5 (173-240)||(29390275-29390347)
chr5 (166-240)||(3631258-3631337)
chr5 (166-235)||(13013339-13013413)
chr5 (166-240)||(9737786-9737865)
chr5 (166-240)||(26525309-26525388)
chr5 (166-240)||(8074318-8074398)
chr5 (166-194)||(16285341-16285369)
[»] chr3 (8 HSPs)
chr3 (166-240)||(36633486-36633565)
chr3 (164-240)||(29126124-29126205)
chr3 (166-240)||(28952472-28952551)
chr3 (166-235)||(52571510-52571584)
chr3 (166-240)||(18163717-18163796)
chr3 (166-233)||(13594961-13595033)
chr3 (173-240)||(21259515-21259587)
chr3 (166-199)||(50527760-50527793)
[»] chr1 (15 HSPs)
chr1 (166-235)||(29981791-29981865)
chr1 (166-240)||(16693028-16693107)
chr1 (166-240)||(51139692-51139764)
chr1 (166-235)||(6849752-6849826)
chr1 (166-235)||(17285378-17285452)
chr1 (166-235)||(29169941-29170015)
chr1 (173-233)||(919796-919861)
chr1 (165-240)||(8530081-8530161)
chr1 (165-235)||(45836853-45836917)
chr1 (165-235)||(9042502-9042577)
chr1 (166-199)||(9247025-9247058)
chr1 (166-199)||(24790434-24790467)
chr1 (138-166)||(5932227-5932255)
chr1 (138-166)||(31883725-31883753)
chr1 (166-240)||(48708496-48708576)
[»] chr4 (15 HSPs)
chr4 (164-240)||(44134491-44134572)
chr4 (166-240)||(6755828-6755907)
chr4 (165-246)||(44817623-44817709)
chr4 (166-240)||(11651046-11651125)
chr4 (166-240)||(18491186-18491265)
chr4 (166-240)||(36955090-36955169)
chr4 (166-240)||(43564417-43564496)
chr4 (164-232)||(51001473-51001546)
chr4 (166-240)||(40228510-40228590)
chr4 (170-240)||(133354-133429)
chr4 (167-240)||(44745670-44745748)
chr4 (166-199)||(19653770-19653803)
chr4 (166-199)||(27270353-27270386)
chr4 (166-199)||(36584423-36584456)
chr4 (199-240)||(45669997-45670038)
[»] chr7 (13 HSPs)
chr7 (166-233)||(36358397-36358469)
chr7 (166-240)||(44142763-44142840)
chr7 (166-235)||(43859090-43859164)
chr7 (173-240)||(16834357-16834429)
chr7 (166-233)||(23562734-23562806)
chr7 (165-240)||(26873701-26873781)
chr7 (173-233)||(44468108-44468173)
chr7 (166-240)||(44724143-44724222)
chr7 (166-199)||(36675613-36675646)
chr7 (138-166)||(442799-442827)
chr7 (166-198)||(9021434-9021466)
chr7 (138-166)||(12005346-12005374)
chr7 (166-233)||(30781010-30781082)
[»] chr6 (3 HSPs)
chr6 (166-235)||(9079140-9079214)
chr6 (166-235)||(24635555-24635629)
chr6 (165-199)||(12698492-12698526)
[»] scaffold0014 (1 HSPs)
scaffold0014 (166-240)||(64933-65012)
[»] scaffold0131 (1 HSPs)
scaffold0131 (165-199)||(11165-11199)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 5523685 - 5523852
Alignment:
Q  1 ttatttatatggagcaaatattgatgatggatacttttaaagtacacttattttttatggggttaataggtttttacctccttttatataggtgaaatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  5523685 ttatttatatggagcaaatattgatgatggatacttttaaagtacacttattttttatggggttaataggtttttacccccttctatataggtgaaatat 5523784  T
Q  101 ggttta-cccttgt-nnnnnnnnngtttcgagatccctctgtaatttaaagattttttggttttggac 166  Q
    |||||| ||| |||          |||||||||||||||| |||||||||||||||||||||||||||    
T  5523785 ggtttaccccctgtaaaaacaaaagtttcgagatccctctataatttaaagattttttggttttggac 5523852  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 34983277 - 34983354
Alignment:
Q  168 gtggtggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||| |||||||||||||||||||||||||||     ||| | |||||||||||||||||||||||||||||| ||||    
T  34983277 gtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattgaaaaatcaacgattataggtctatt 34983354  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 6750165 - 6750086
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||| |||||||||||||||||||| ||||    
T  6750165 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaatttaaaaatcaacgattataggtctatt 6750086  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 22674902 - 22674820
Alignment:
Q  163 ggacagtggtggagcccttcatgggctggggtgg-----gccccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    ||||||||| ||||||||||||||||||||||||     | |||| | ||||||||| |||||||||||||||||||| ||||    
T  22674902 ggacagtggcggagcccttcatgggctggggtggaccacggcccacccggaaaaattaaaaaatcaacgattataggtctatt 22674820  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 12994975 - 12995039
Alignment:
Q  167 agtggtggagcccttcatgggctggggtgggccccatctggaaaaattgaaaaatcaacgattataggt 235  Q
    ||||| |||||||||||||||||||||||||||     | |||||||| ||||||||||||||||||||    
T  12994975 agtggcggagcccttcatgggctggggtgggcc----gtagaaaaattaaaaaatcaacgattataggt 12995039  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 38527173 - 38527252
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||  |||||||||||||||||||| ||||    
T  38527173 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaataaaaaaatcaacgattataggtctatt 38527252  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 41699221 - 41699262
Alignment:
Q  199 cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  41699221 cccatccggaaaaattaaaaaatcaacgattataggtatatt 41699262  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 1115198 - 1115164
Alignment:
Q  165 acagtggtggagcccttcatgggctggggtgggcc 199  Q
    ||||||| |||||||||||||||||||||||||||    
T  1115198 acagtggcggagcccttcatgggctggggtgggcc 1115164  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 1021229 - 1021196
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc 199  Q
    |||||| |||||||||||||||||||||||||||    
T  1021229 cagtggcggagcccttcatgggctggggtgggcc 1021196  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 2249580 - 2249613
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc 199  Q
    |||||| |||||||||||||||||||||||||||    
T  2249580 cagtggcggagcccttcatgggctggggtgggcc 2249613  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 28745653 - 28745620
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc 199  Q
    |||||| |||||||||||||||||||||||||||    
T  28745653 cagtggcggagcccttcatgggctggggtgggcc 28745620  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 32099928 - 32099961
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc 199  Q
    |||||||||||||||||||||||| |||||||||    
T  32099928 cagtggtggagcccttcatgggctagggtgggcc 32099961  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 36436341 - 36436308
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc 199  Q
    |||||| |||||||||||||||||||||||||||    
T  36436341 cagtggcggagcccttcatgggctggggtgggcc 36436308  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 19253680 - 19253652
Alignment:
Q  138 tgtaatttaaagattttttggttttggac 166  Q
    |||||||||||||||||||||||||||||    
T  19253680 tgtaatttaaagattttttggttttggac 19253652  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 24797213 - 24797134
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| |||||||||||||||||||||||||||     ||||| ||||||||| |||||||||||||||||||| ||||    
T  24797213 cagtggcggagcccttcatgggctggggtgggccacggcccatccggaaaaatttaaaaatcaacgattataggtctatt 24797134  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 21434842 - 21434918
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc--cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| |||||| ||||||| |||| ||||||  |||||| ||||||||| |||||||||||||||||||| ||||    
T  21434842 cagtggcggagcctttcatggactggagtgggcggcccatccggaaaaattaaaaaatcaacgattataggtttatt 21434918  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 9830607 - 9830686
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||| | | ||||||| |||||||||||||||||||| ||||    
T  9830607 cagtggcggagcccttcatgggctggggtgggccacggcccacccgaaaaaattaaaaaatcaacgattataggtttatt 9830686  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 41838114 - 41838035
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||  | ||||||||| |||||||||||||||||||| ||||    
T  41838114 cagtggcggagcccttcatgggctggggtgggccacggcccgcccggaaaaattaaaaaatcaacgattataggtctatt 41838035  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 7012336 - 7012416
Alignment:
Q  165 acagtggtggagcccttcatgggctggggtgggccccatct-----ggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    ||||||| ||||||||||||||||||||||||||| |  ||     ||||||||| ||||||||| |||||||||| ||||    
T  7012336 acagtggcggagcccttcatgggctggggtgggccacggctcactcggaaaaattaaaaaatcaatgattataggtctatt 7012416  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 36060402 - 36060436
Alignment:
Q  206 ggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    ||||||||| |||||||||||||||||||||||||    
T  36060402 ggaaaaattaaaaaatcaacgattataggtatatt 36060436  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 38567174 - 38567208
Alignment:
Q  206 ggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    ||||||||| |||||||||||||||||||||||||    
T  38567174 ggaaaaattaaaaaatcaacgattataggtatatt 38567208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 34934415 - 34934382
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc 199  Q
    |||||| |||||||||||||||||||||||||||    
T  34934415 cagtggcggagcccttcatgggctggggtgggcc 34934382  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 1183823 - 1183855
Alignment:
Q  167 agtggtggagcccttcatgggctggggtgggcc 199  Q
    ||||| |||||||||||||||||||||||||||    
T  1183823 agtggcggagcccttcatgggctggggtgggcc 1183855  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 31974740 - 31974768
Alignment:
Q  138 tgtaatttaaagattttttggttttggac 166  Q
    |||||||||||||||||||||||||||||    
T  31974740 tgtaatttaaagattttttggttttggac 31974768  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 42556214 - 42556174
Alignment:
Q  200 ccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    ||||| ||||||||| |||||||||||||||||||| ||||    
T  42556214 ccatccggaaaaattaaaaaatcaacgattataggtctatt 42556174  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 16823126 - 16823209
Alignment:
Q  162 tggacagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||| ||||||||||||||||||||||||||     |||||| ||||||||| |||||||||||||||||||| ||||    
T  16823126 tggacaatggcggagcccttcatgggctggggtgggccacggcccatccggaaaaattaaaaaatcaacgattataggtctatt 16823209  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 41084738 - 41084661
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc---ccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| |||||||||||||||||||||||||||   ||| | ||||||||| |||||||||||||||||||| ||||    
T  41084738 cagtggcggagcccttcatgggctggggtgggccggtccacccggaaaaattaaaaaatcaacgattataggtctatt 41084661  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 25701579 - 25701507
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattatag 233  Q
    |||||| ||||||||||||||||||||||||||     |||||| ||||||||| ||||||||||||||||||    
T  25701579 cagtggcggagcccttcatgggctggggtgggccacggcccatccggaaaaattaaaaaatcaacgattatag 25701507  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 29390275 - 29390347
Alignment:
Q  173 ggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||||||||||||||||||||||||     ||| ||||||||||| |||||||||||||||||||| ||||    
T  29390275 ggagcccttcatgggctggggtgggccacggcccacctggaaaaattaaaaaatcaacgattataggtgtatt 29390347  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 3631258 - 3631337
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||| |||||||||||||||||||| ||||    
T  3631258 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctatt 3631337  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 13013413 - 13013339
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggt 235  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||| ||||||||||||||||||||    
T  13013413 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggt 13013339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 9737865 - 9737786
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||| |||||| ||||||||||||| ||||    
T  9737865 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaattaacgattataggtctatt 9737786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 26525388 - 26525309
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||  |||||||||||||||||||| ||||    
T  26525388 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaataaaaaaatcaacgattataggtctatt 26525309  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 8074398 - 8074318
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaa-attgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||| ||||||||  || |||||||||||||||||||| ||||    
T  8074398 cagtggcggagcccttcatgggctggggtgggccacggcccacctggaaaattttaaaaaatcaacgattataggtctatt 8074318  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Complemental strand, 16285369 - 16285341
Alignment:
Q  166 cagtggtggagcccttcatgggctggggt 194  Q
    |||||||||||||||||||||||||||||    
T  16285369 cagtggtggagcccttcatgggctggggt 16285341  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 36633486 - 36633565
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||||| ||||||||| |||||||||||||||||||| ||||    
T  36633486 cagtggcggagcccttcatgggctggggtgggccacgacccatccggaaaaattaaaaaatcaacgattataggtctatt 36633565  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 29126205 - 29126124
Alignment:
Q  164 gacagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||||| ||||||||||||||||||||||||||     |||| | ||||||||| |||||||||||||||||||| ||||    
T  29126205 gacagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctatt 29126124  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 28952551 - 28952472
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| |||||||||||||||||||||||||||     ||| ||||||||||| |||||||||||||||| ||| ||||    
T  28952551 cagtggcggagcccttcatgggctggggtgggccacgatccacctggaaaaattaaaaaatcaacgattatgggtctatt 28952472  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 52571584 - 52571510
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggt 235  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||| ||||||||||||||||||||    
T  52571584 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggt 52571510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 18163717 - 18163796
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||  |||||||||||||||||||| ||||    
T  18163717 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaataaaaaaatcaacgattataggtctatt 18163796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 13595033 - 13594961
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattatag 233  Q
    |||||| ||||||| ||||||||||||||||||     |||| ||| ||||||| ||||||||||||||||||    
T  13595033 cagtggcggagcccgtcatgggctggggtgggccacggcccacctgaaaaaattaaaaaatcaacgattatag 13594961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 21259587 - 21259515
Alignment:
Q  173 ggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    ||||||||||||||| ||| |||||||     ||||| ||||||||| |||||||||||||||||||| ||||    
T  21259587 ggagcccttcatgggttggagtgggccacgacccatccggaaaaatttaaaaatcaacgattataggtctatt 21259515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 50527793 - 50527760
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc 199  Q
    |||||| |||||||||||||||||||||||||||    
T  50527793 cagtggcggagcccttcatgggctggggtgggcc 50527760  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 29981865 - 29981791
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggt 235  Q
    |||||| ||||||||||||||||||||||||||     |||||| ||||||||| ||||||||||||||||||||    
T  29981865 cagtggcggagcccttcatgggctggggtgggccacggcccatccggaaaaattaaaaaatcaacgattataggt 29981791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 16693107 - 16693028
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||| |||||||||||||||||||| ||||    
T  16693107 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctatt 16693028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 51139692 - 51139764
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggccccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||||||||||||||||||||||||||||  |||| |   ||||||| |||||||||||||||||||| ||||    
T  51139692 cagtggtggagcccttcatgggctggggtgg--cccaccccaaaaaattaaaaaatcaacgattataggtctatt 51139764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 6849752 - 6849826
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggt 235  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||| ||||||||||||||||||||    
T  6849752 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggt 6849826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 17285452 - 17285378
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggt 235  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||| ||||||||||||||||||||    
T  17285452 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggt 17285378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 29169941 - 29170015
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggt 235  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||| ||||||||||||||||||||    
T  29169941 cagtggcggagcccttcatgggctggggtgggccacagcccacccggaaaaattaaaaaatcaacgattataggt 29170015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 919861 - 919796
Alignment:
Q  173 ggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattatag 233  Q
    |||||||||||||||||||||||||||     ||||| ||||||||| ||||||||||||||||||    
T  919861 ggagcccttcatgggctggggtgggccacggcccatccggaaaaatttaaaaatcaacgattatag 919796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 8530081 - 8530161
Alignment:
Q  165 acagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    ||||||| ||||||||||||||||||||||||||     |||| | | ||||||| |||||||||||||||||||| ||||    
T  8530081 acagtggcggagcccttcatgggctggggtgggccacggcccacccgaaaaaattaaaaaatcaacgattataggtctatt 8530161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 45836853 - 45836917
Alignment:
Q  165 acagtggtggagcccttcatgggctggggtgggccccatctggaaaaattgaaaaatcaacgattataggt 235  Q
    ||||||| |||||||||||||||||||||||||||      | ||||||| ||||||||||||||||||||    
T  45836853 acagtggcggagcccttcatgggctggggtgggcc------gtaaaaattaaaaaatcaacgattataggt 45836917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 9042577 - 9042502
Alignment:
Q  165 acagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggt 235  Q
    ||||||| |||||||||||||||||||| |||||     |||||| ||||||||| |||||||||  |||||||||    
T  9042577 acagtggcggagcccttcatgggctgggctgggccacggcccatccggaaaaattaaaaaatcaataattataggt 9042502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 9247058 - 9247025
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc 199  Q
    ||||||||||||||||||||||||| ||||||||    
T  9247058 cagtggtggagcccttcatgggctgaggtgggcc 9247025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 24790434 - 24790467
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc 199  Q
    |||||||||||||||||||||||||| |||||||    
T  24790434 cagtggtggagcccttcatgggctggagtgggcc 24790467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 5932255 - 5932227
Alignment:
Q  138 tgtaatttaaagattttttggttttggac 166  Q
    |||||||||||||||||||||||||||||    
T  5932255 tgtaatttaaagattttttggttttggac 5932227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 31883753 - 31883725
Alignment:
Q  138 tgtaatttaaagattttttggttttggac 166  Q
    |||||||||||||||||||||||||||||    
T  31883753 tgtaatttaaagattttttggttttggac 31883725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 48708576 - 48708496
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaatt-gaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||| ||     |||||| | |||||||  |||||||||||||||||||| ||||    
T  48708576 cagtggcggagcccttcatgggctggggtgagccacggcccatccgaaaaaattaaaaaaatcaacgattataggtctatt 48708496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 44134491 - 44134572
Alignment:
Q  164 gacagtggtggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||||| |||||||||||||||||||||||||||     ||| | ||||||||| |||||||||||||||||||| ||||    
T  44134491 gacagtggcggagcccttcatgggctggggtgggccacggtccacccggaaaaattaaaaaatcaacgattataggtctatt 44134572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 6755828 - 6755907
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||| |||||||||||||||||||| ||||    
T  6755828 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctatt 6755907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 44817709 - 44817623
Alignment:
Q  165 acagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatattcttcga 246  Q
    ||||||| ||||||||||||||||||||||||||     |||| | ||||||||| |||||||||||| ||||||| |||| |||||    
T  44817709 acagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgactataggtctatttttcga 44817623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 11651125 - 11651046
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||  | ||||||||| |||||||||||||||||||| ||||    
T  11651125 cagtggcggagcccttcatgggctggggtgggccacggcccgcccggaaaaattaaaaaatcaacgattataggtctatt 11651046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 18491186 - 18491265
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     ||||   ||||||||| |||||||||||||||||||| ||||    
T  18491186 cagtggcggagcccttcatgggctggggtgggccacggcccactcggaaaaattaaaaaatcaacgattataggtctatt 18491265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 36955169 - 36955090
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     ||||||   ||||||| |||||||||||||||||||| ||||    
T  36955169 cagtggcggagcccttcatgggctggggtgggccgtgacccatcccaaaaaattaaaaaatcaacgattataggtctatt 36955090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 43564417 - 43564496
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||| |||||| ||||||||||||||     ||||| ||||||||| |||||||||||||||||||| ||||    
T  43564417 cagtggcggagctcttcattggctggggtgggccacagtccatccggaaaaattaaaaaatcaacgattataggtctatt 43564496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 51001473 - 51001546
Alignment:
Q  164 gacagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattata 232  Q
    |||||||| ||||||||||||||||||||||||||     |||| | ||||||||| ||||||||||| |||||    
T  51001473 gacagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgtttata 51001546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 40228590 - 40228510
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaa-ttgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||| || |||||||||||||||||||| ||||    
T  40228590 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaatttaaaaaatcaacgattataggtctatt 40228510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 133354 - 133429
Alignment:
Q  170 ggtggagcccttcatgggctggggtgggccccatc-----tggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||| ||||||||||| ||||     |||||||||| |||||| | ||||||||||||||||    
T  133354 ggtggatcccttcatgggatggggtgggccacatcccacctggaaaaattaaaaaattagcgattataggtatatt 133429  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 44745748 - 44745670
Alignment:
Q  167 agtggtggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    ||||| |||||| || |||||||||||||||||     |||||  |||||||| |||||||||||||||||||| ||||    
T  44745748 agtggcggagcctttaatgggctggggtgggccacggcccatccagaaaaattaaaaaatcaacgattataggtctatt 44745670  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 19653803 - 19653770
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc 199  Q
    |||||| |||||||||||||||||||||||||||    
T  19653803 cagtggcggagcccttcatgggctggggtgggcc 19653770  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 27270353 - 27270386
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc 199  Q
    |||||| |||||||||||||||||||||||||||    
T  27270353 cagtggcggagcccttcatgggctggggtgggcc 27270386  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 36584423 - 36584456
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc 199  Q
    |||||| |||||||||||||||||||||||||||    
T  36584423 cagtggcggagcccttcatgggctggggtgggcc 36584456  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 45669997 - 45670038
Alignment:
Q  199 cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||| |||||||||||||||||||| ||||    
T  45669997 cccatccggaaaaattaaaaaatcaacgattataggtttatt 45670038  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 36358469 - 36358397
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattatag 233  Q
    |||||| |||||||||||||||||||||||||||     ||| ||||||||||| ||||||||||||||||||    
T  36358469 cagtggcggagcccttcatgggctggggtgggccacggtccacctggaaaaattaaaaaatcaacgattatag 36358397  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 44142763 - 44142840
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc---ccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| | ||||||||||||||| |||||||||   |||||  |||||||| |||||||||||||||||||||||||    
T  44142763 cagtggcgaagcccttcatgggctcgggtgggccggcccatccagaaaaattaaaaaatcaacgattataggtatatt 44142840  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 43859090 - 43859164
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattataggt 235  Q
    |||||| ||||||||||||||||| |||||||||     ||| ||||||||||| ||||||||||||||||||||    
T  43859090 cagtggcggagcccttcatgggctagggtgggccacggcccacctggaaaaattaaaaaatcaacgattataggt 43859164  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 16834429 - 16834357
Alignment:
Q  173 ggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    ||||||||||||||||||||||||||     |||||| ||||||||  |||||||||||||||||||| ||||    
T  16834429 ggagcccttcatgggctggggtgggccatggcccatccggaaaaataaaaaaatcaacgattataggtttatt 16834357  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 23562806 - 23562734
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattatag 233  Q
    |||||| ||||||||||||| |||||||||||||     ||| ||||||||||| ||||||||||||||||||    
T  23562806 cagtggcggagcccttcatgagctggggtgggccatggcccacctggaaaaattaaaaaatcaacgattatag 23562734  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 26873701 - 26873781
Alignment:
Q  165 acagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    ||||||| ||||||||||||||||||||||||||     |||| | ||||||||| ||||||||| |||||||||| ||||    
T  26873701 acagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaatgattataggtctatt 26873781  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 44468173 - 44468108
Alignment:
Q  173 ggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattatag 233  Q
    |||||||||||| ||||||||||||||     ||| ||||||||||| ||||||||||||||||||    
T  44468173 ggagcccttcataggctggggtgggccacggcccacctggaaaaattaaaaaatcaacgattatag 44468108  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 44724222 - 44724143
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||| ||||| |||| ||||||||| ||||    
T  44724222 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaaccaactattataggtttatt 44724143  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 36675646 - 36675613
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc 199  Q
    |||||| |||||||||||||||||||||||||||    
T  36675646 cagtggcggagcccttcatgggctggggtgggcc 36675613  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 442827 - 442799
Alignment:
Q  138 tgtaatttaaagattttttggttttggac 166  Q
    |||||||||||||||||||||||||||||    
T  442827 tgtaatttaaagattttttggttttggac 442799  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 9021434 - 9021466
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc 198  Q
    |||||||||||||||||||||||| ||||||||    
T  9021434 cagtggtggagcccttcatgggctagggtgggc 9021466  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 12005346 - 12005374
Alignment:
Q  138 tgtaatttaaagattttttggttttggac 166  Q
    |||||||||||||||||||||||||||||    
T  12005346 tgtaatttaaagattttttggttttggac 12005374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 30781010 - 30781082
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattatag 233  Q
    |||||||||||||||||||||| | ||||||||     |||||||| ||||||| |||||| |||||| ||||    
T  30781010 cagtggtggagcccttcatgggttagggtgggccacgacccatctgaaaaaattaaaaaattaacgatcatag 30781082  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 9079214 - 9079140
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattataggt 235  Q
    |||||| |||||||||||||| ||||||||||||     ||||| ||||||||| ||||||||||||||||||||    
T  9079214 cagtggcggagcccttcatggactggggtgggccacagcccatccggaaaaattaaaaaatcaacgattataggt 9079140  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 24635629 - 24635555
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggcc-----ccatctggaaaaattgaaaaatcaacgattataggt 235  Q
    |||||| | |||||||||||||||||||||||||     ||||| ||||||||| ||||||||||||||||||||    
T  24635629 cagtggcgaagcccttcatgggctggggtgggccacggcccatccggaaaaattaaaaaatcaacgattataggt 24635555  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 12698492 - 12698526
Alignment:
Q  165 acagtggtggagcccttcatgggctggggtgggcc 199  Q
    ||||||| |||||||||||||||||||||||||||    
T  12698492 acagtggcggagcccttcatgggctggggtgggcc 12698526  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 64933 - 65012
Alignment:
Q  166 cagtggtggagcccttcatgggctggggtgggc-----cccatctggaaaaattgaaaaatcaacgattataggtatatt 240  Q
    |||||| ||||||||||||||||||||||||||     |||| | ||||||||| ||||| ||||| |||||||| ||||    
T  64933 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaaacaacgcttataggtctatt 65012  T

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Target: scaffold0131 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 11165 - 11199
Alignment:
Q  165 acagtggtggagcccttcatgggctggggtgggcc 199  Q
    ||||||| |||||||||||||||||||||||||||    
T  11165 acagtggcggagcccttcatgggctggggtgggcc 11199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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