View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6701_low_2 (Length: 577)
Name: NF6701_low_2
Description: NF6701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6701_low_2 |
 | |
|
| [»] scaffold0069 (2 HSPs) |
| | |
|
| [»] scaffold0006 (4 HSPs) |
| | |
|
| [»] scaffold0460 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0069 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 47589 - 47208
Alignment:
| Q |
1 |
ttcaacaaacatagcagtaaaatatagttcataagctgatattccatagtaaaagtgtggannnnnnnc-cagaaactcatgaaaaccaagactgtgaat |
99 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47589 |
ttcaacaaacgtagcagtaaaatatagttcataagctgatatcccatagtaaaagtgtggatttttttttcagaaactcatgaaaaccaagactgtgaat |
47490 |
T |
|
| Q |
100 |
ccagtccaaaggatgacattagctcagatgaaacagaagatggaactgttcctatgagtttgtatgctcaaaaggctctcaatcttaactccctggggtg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47489 |
ccagtccaaaggatgacattagctcagatgaaacagaagatggaactgttcctttgagtttgtatgctcaaaaggctctcaatcttaactccctggggtg |
47390 |
T |
|
| Q |
200 |
ttgactatgaagatgaagtaaagaaatactcatcgacatgagattcctaaccatggaaaa-ttcaaatagttatttctaatatagagaatagaaatatag |
298 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
47389 |
ttgactatgaagatgaagtaaa-aaatactcatcgacatgagattcctaaccatggaaaatttcaaatagttatttctaatatagaga--------atag |
47299 |
T |
|
| Q |
299 |
aatgataaaaaatgattagaaaacagtccagaaatgatccaaccaatgcccattagagggatgttatcccaaaaccatattttccattaaa |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47298 |
aatgataaaaaatgattagaaaacagtccagaaatgatccaaccaatgcccattagagggatgttatcccaaaaccatattttccattaaa |
47208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 47209 - 47169
Alignment:
| Q |
407 |
aagagacctttggttggatataactaatcttcaacaagccc |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47209 |
aagagacctttggttggatataactaatcttcaacaagccc |
47169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 20377287 - 20376906
Alignment:
| Q |
1 |
ttcaacaaacatagcagtaaaatatagttcataagctgatattccatagtaaaagtgtggannnnnnnc-cagaaactcatgaaaaccaagactgtgaat |
99 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20377287 |
ttcaacaaacgtagcagtaaaatatagttcataagctgatatcccatagtaaaagtgtggatttttttttcagaaactcatgaaaaccaagactgtgaat |
20377188 |
T |
|
| Q |
100 |
ccagtccaaaggatgacattagctcagatgaaacagaagatggaactgttcctatgagtttgtatgctcaaaaggctctcaatcttaactccctggggtg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20377187 |
ccagtccaaaggatgacattagctcagatgaaacagaagatggaactgttcctttgagtttgtatgctcaaaaggctctcaatcttaactccctggggtg |
20377088 |
T |
|
| Q |
200 |
ttgactatgaagatgaagtaaagaaatactcatcgacatgagattcctaaccatggaaaa-ttcaaatagttatttctaatatagagaatagaaatatag |
298 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
20377087 |
ttgactatgaagatgaagtaaa-aaatactcatcgacatgagattcctaaccatggaaaatttcaaatagttatttctaatatagaga--------atag |
20376997 |
T |
|
| Q |
299 |
aatgataaaaaatgattagaaaacagtccagaaatgatccaaccaatgcccattagagggatgttatcccaaaaccatattttccattaaa |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20376996 |
aatgataaaaaatgattagaaaacagtccagaaatgatccaaccaatgcccattagagggatgttatcccaaaaccatattttccattaaa |
20376906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 70 - 424
Target Start/End: Complemental strand, 20485757 - 20485415
Alignment:
| Q |
70 |
cagaaactcatgaaaaccaagactgtgaatccagtccaaaggatgacattagctcagatgaaacagaagatggaactgttcctatgagtttgtatgctca |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
20485757 |
cagaaactcatgaaaaccaagactgtgaatcctgtccaaaggatgacattagctcagatgaaacagaagatggaacggttcctttgagtttgcatgctca |
20485658 |
T |
|
| Q |
170 |
aaaggctctcaatcttaactccctggggtgttgactatgaagatgaagtaaagaaatactcatcgacatgagattcctaaccatggaaaa-ttcaaatag |
268 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
20485657 |
aatggctctcaatcttaactccctagggtgttgattaataagatgaagtaaa-aaatactcatcgacatgagattcttaaccatggaaaatttcaaatag |
20485559 |
T |
|
| Q |
269 |
ttatttctaatatagagaatagaaatatagaatgataaaaaatgattagaaaacagtccagaaatgatccaaccaatgcccattagagggatgttatccc |
368 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20485558 |
ttatttctaatatagaga--------atagaatgataaaaaa-gattagaaaacagtccagaaatgatccaaccaatgcccattacagggatgttatccc |
20485468 |
T |
|
| Q |
369 |
aaaaccatattttccattaaaataccatatgttcttagaagagacctttggttgga |
424 |
Q |
| |
|
||||||||| |||||||||||||| ||||| || ||||| ||||||||||||||| |
|
|
| T |
20485467 |
aaaaccata-tttccattaaaatatcatatttttttaga--agacctttggttgga |
20485415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 132 - 468
Target Start/End: Complemental strand, 13595788 - 13595461
Alignment:
| Q |
132 |
acagaagatggaactgttcctatgagtttgtatgctcaaaaggctctcaatcttaactccctggggtgttgactatgaagatgaagtaaagaaatactca |
231 |
Q |
| |
|
|||||||||||||| |||||| || |||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13595788 |
acagaagatggaacagttccttcgactttgcatgcgtaaaaatctctcaatcttaactcgctggggtgttgactatgaagatgaagtaaa-aaatactca |
13595690 |
T |
|
| Q |
232 |
tcgacatgagattcctaaccatggaaaatt-caaatagttatttctaatatagagaatagaaatatagaatgataaaaaatgattagaaaacagtccaga |
330 |
Q |
| |
|
|||||||||||||||||||| || |||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
13595689 |
tcgacatgagattcctaaccttgaaaaatttcaagtagttatttctaatatagagaatagaa--------tgataaaaaa-gattagaaaacagtccaga |
13595599 |
T |
|
| Q |
331 |
aatgatccaaccaatgcccattagagggatgttatcccaaaaccatattttccattaaaataccatatgttcttagaagagacctttggttggatataac |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13595598 |
aatgatccaaccaatgcccattagagggatgttatccgaaaaccatattttccattaaaatatcatatgttcttagaagagacctttggttggatataac |
13595499 |
T |
|
| Q |
431 |
taatcttcaacaagcccacacgggcccttggtgcttta |
468 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13595498 |
taattgtcaacaagcccacacgggcccttggtgcttta |
13595461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 132 - 420
Target Start/End: Complemental strand, 13676949 - 13676670
Alignment:
| Q |
132 |
acagaagatggaactgttcctatgagtttgtatgctcaaaaggctctcaatcttaactccctggggtgttgactatgaagatgaagtaaagaaatactca |
231 |
Q |
| |
|
|||||||||||||| |||||| || |||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13676949 |
acagaagatggaacagttccttcgactttgcatgcttaaaaagctctcaatcttaactcgctggggtgttgactatgaagatgaagtaaa-aaatactca |
13676851 |
T |
|
| Q |
232 |
tcgacatgagattcctaaccatggaaaa-ttcaaatagttatttctaatatagagaatagaaatatagaatgataaaaaatgattagaaaacagtccaga |
330 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
13676850 |
ttgacatgagattcctaaccatggaaaatttcaaatagttatttctaatatagaga--------ataaaatgataaaaaa-gattagaaaacagtccaga |
13676760 |
T |
|
| Q |
331 |
aatgatccaaccaatgcccattagagggatgttatcccaaaaccatattttccattaaaataccatatgttcttagaagagacctttggt |
420 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
13676759 |
aatgatccaaccaatgcccataacagggatgttatcccaaaaccatattttccattaaaatatcatatgttcttagaagagacctctggt |
13676670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 20511294 - 20511418
Alignment:
| Q |
1 |
ttcaacaaacatagcagtaaaatatagttcataagctgatattccatagtaaaagtgtggannnnnnnccagaaactcatgaaaaccaagactgtgaatc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
20511294 |
ttcaacaaacgtagcagtaaaatatagttcataagctgatatcccatagtaaaagtgtggatattttttcagaaactcatgaaaaccaagac--tgaatc |
20511391 |
T |
|
| Q |
101 |
cagtccaaaggatgacattagctcaga |
127 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
20511392 |
cagtccaaatgatgacattagctcaga |
20511418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 493 - 566
Target Start/End: Original strand, 20511431 - 20511504
Alignment:
| Q |
493 |
ggaagatctcctttaaaacagaagacctctgttcttctggagtaactaaaggctcgagactcctcttcttgatg |
566 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
20511431 |
ggaagatctcctttaaaacagaagacctccgttcttctagagtaactaaaggctcaggactcctcttcttgatg |
20511504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 493 - 566
Target Start/End: Complemental strand, 20485417 - 20485344
Alignment:
| Q |
493 |
ggaagatctcctttaaaacagaagacctctgttcttctggagtaactaaaggctcgagactcctcttcttgatg |
566 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
20485417 |
ggaaaatctcctttaaagcagaagacctccgttcttctggaataactaaaggctcaggactcctcttcttgatg |
20485344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 20376907 - 20376867
Alignment:
| Q |
407 |
aagagacctttggttggatataactaatcttcaacaagccc |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20376907 |
aagagacctttggttggatataactaatcttcaacaagccc |
20376867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 424
Target Start/End: Complemental strand, 113403 - 112992
Alignment:
| Q |
2 |
tcaacaaacatagcagtaaaatatagttcataagctgatattccatagtaaaagtgtggannnnnnnccagaaactcatgaaaaccaagactgtgaatcc |
101 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
113403 |
tcaacaaacgtagcagtaaaatatagttcataagctgatatcccatagtaatagtgaggattttttttcagaaactcatgaaaaccaagactgtgaatcc |
113304 |
T |
|
| Q |
102 |
agtccaaaggatgacattagctcagatgaaacagaagatggaactgttcctatgagtttgtatgctcaaaaggctctcaatcttaactccctggggtgtt |
201 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
113303 |
agtccaaatgatgacattagctcagatgaaacagaagatggaactgttcctttgagtttgcatgctcaaaaggctctcaatcttaactccctggggtgtt |
113204 |
T |
|
| Q |
202 |
gactatgaagatgaagtaaagaaatactcatcgacatgagattcctaaccat-ggaaaattcaaatagttatttctaatatagagaatagaaatatagaa |
300 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| || |
|
|
| T |
113203 |
gactaataagatgaagtaaa-aaatactcatcgacatgagattcctaaccatgggaaatttcaaatagttatttctaatatagaga--------ataaaa |
113113 |
T |
|
| Q |
301 |
tgataaaaaatgattagaaaacagtccagaaatgatccaaccaatgcccattagagggatgttatcccaaaaccatattttccattaaaataccatatgt |
400 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
113112 |
tgataaaaaa-gattagaaaacagtccagaaatgatccaaccaatgcccattacagggatgttatcccaaaaccatattttccattaaaatatcatatgt |
113014 |
T |
|
| Q |
401 |
tcttagaagagacctttggttgga |
424 |
Q |
| |
|
| ||||| ||||||||||||||| |
|
|
| T |
113013 |
ttttaga--agacctttggttgga |
112992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 132 - 420
Target Start/End: Complemental strand, 174531 - 174252
Alignment:
| Q |
132 |
acagaagatggaactgttcctatgagtttgtatgctcaaaaggctctcaatcttaactccctggggtgttgactatgaagatgaagtaaagaaatactca |
231 |
Q |
| |
|
|||||||||||||| |||||| || |||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
174531 |
acagaagatggaacagttccttcgactttgcatgcttaaaaagctctcaatcttaactcgctggggtgttgactatgaagatgaagtaaa-aaatactca |
174433 |
T |
|
| Q |
232 |
tcgacatgagattcctaaccatggaaaa-ttcaaatagttatttctaatatagagaatagaaatatagaatgataaaaaatgattagaaaacagtccaga |
330 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
174432 |
ttgacatgagattcctaaccatggaaaatttcaaatagttatttctaatatagaga--------ataaaatgataaaaaa-gattagaaaacagtccaga |
174342 |
T |
|
| Q |
331 |
aatgatccaaccaatgcccattagagggatgttatcccaaaaccatattttccattaaaataccatatgttcttagaagagacctttggt |
420 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
174341 |
aatgatccaaccaatgcccataacagggatgttatcccaaaaccatattttccattaaaatatcatatgttcttagaagagacctctggt |
174252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 132 - 420
Target Start/End: Complemental strand, 189939 - 189660
Alignment:
| Q |
132 |
acagaagatggaactgttcctatgagtttgtatgctcaaaaggctctcaatcttaactccctggggtgttgactatgaagatgaagtaaagaaatactca |
231 |
Q |
| |
|
|||||||||||||| |||||| || |||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
189939 |
acagaagatggaacagttccttcgactttgcatgcttaaaaagctctcaatcttaactcgctggggtgttgactatgaagatgaagtaaa-aaatactca |
189841 |
T |
|
| Q |
232 |
tcgacatgagattcctaaccatggaaaa-ttcaaatagttatttctaatatagagaatagaaatatagaatgataaaaaatgattagaaaacagtccaga |
330 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
189840 |
ttgacatgagattcctaaccatggaaaatttcaaatagttatttctaatatagaga--------ataaaatgataaaaaa-gattagaaaacagtccaga |
189750 |
T |
|
| Q |
331 |
aatgatccaaccaatgcccattagagggatgttatcccaaaaccatattttccattaaaataccatatgttcttagaagagacctttggt |
420 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
189749 |
aatgatccaaccaatgcccataacagggatgttatcccaaaaccatattttccattaaaatatcatatgttcttagaagagacctctggt |
189660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 493 - 566
Target Start/End: Complemental strand, 112994 - 112921
Alignment:
| Q |
493 |
ggaagatctcctttaaaacagaagacctctgttcttctggagtaactaaaggctcgagactcctcttcttgatg |
566 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
112994 |
ggaagatctcctttaaaacagaagacctccgttcttttggagtaactaaaggctcaggacacctcttcttgatg |
112921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: scaffold0460
Description:
Target: scaffold0460; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 6793 - 6381
Alignment:
| Q |
1 |
ttcaacaaacatagcagtaaaatatagttcataagctgatattccatagtaaaagtgtggannnnnnnccagaaactcatgaaaaccaagactgtgaatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||| |||||||||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6793 |
ttcaacaaacgtagcagtaaaatatagttcataagcttatatcccatagtaaatgtaaggatgttttttcagaaactcatgaaaaccaagactgtgaatc |
6694 |
T |
|
| Q |
101 |
cagtccaaaggatgacattagctcagatgaaacagaagatggaactgttcctatgagtttgtatgctcaaaaggctctcaatcttaactccctggggtgt |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
6693 |
ctgtccaaaggatgacattagctcagatgaaacagaagatggaacggttcctttgagtttgcatgctcaaatggctctcaatcttaactccctagggtgt |
6594 |
T |
|
| Q |
201 |
tgactatgaagatgaagtaaagaaatactcatcgacatgagattcctaaccatggaaaa-ttcaaatagttatttctaatatagagaatagaaatataga |
299 |
Q |
| |
|
||| || ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
6593 |
tgattaataagatgaagtaaa-aaatactcatcgacatgagattcttaaccatggaaaatttcaaatagttatttctaatatagaga--------ataga |
6503 |
T |
|
| Q |
300 |
atgataaaaaatgattagaaaacagtccagaaatgatccaaccaatgcccattagagggatgttatcccaaaaccatattttccattaaaataccatatg |
399 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6502 |
atgataaaaaa-gattagaaaacagtccagaaatgatccaaccaatgcccattacagggatgttatcccaaaaccatattttccattaaaatatcatatt |
6404 |
T |
|
| Q |
400 |
ttcttagaagagacctttggttgga |
424 |
Q |
| |
|
|| ||||| ||||||||||||||| |
|
|
| T |
6403 |
tttttaga--agacctttggttgga |
6381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 11358 - 10946
Alignment:
| Q |
1 |
ttcaacaaacatagcagtaaaatatagttcataagctgatattccatagtaaaagtgtggannnnnnnccagaaactcatgaaaaccaagactgtgaatc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||| |||||||||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11358 |
ttcaacaaacgtagcagtaaaatatagttcataagcttatatcccatagtaaatgtaaggatgttttttcagaaactcatgaaaaccaagactgtgaatc |
11259 |
T |
|
| Q |
101 |
cagtccaaaggatgacattagctcagatgaaacagaagatggaactgttcctatgagtttgtatgctcaaaaggctctcaatcttaactccctggggtgt |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
11258 |
ctgtccaaaggatgacattagctcagatgaaacagaagatggaacggttcctttgagtttgcatgctcaaatggctctcaatcttaactccctagggtgt |
11159 |
T |
|
| Q |
201 |
tgactatgaagatgaagtaaagaaatactcatcgacatgagattcctaaccatggaaaa-ttcaaatagttatttctaatatagagaatagaaatataga |
299 |
Q |
| |
|
||| || ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
11158 |
tgattaataagatgaagtaaa-aaatactcatcgacatgagattcttaaccatggaaaatttcaaatagttatttctaatatagaga--------ataga |
11068 |
T |
|
| Q |
300 |
atgataaaaaatgattagaaaacagtccagaaatgatccaaccaatgcccattagagggatgttatcccaaaaccatattttccattaaaataccatatg |
399 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11067 |
atgataaaaaa-gattagaaaacagtccagaaatgatccaaccaatgcccattacagggatgttatcccaaaaccatattttccattaaaatatcatatt |
10969 |
T |
|
| Q |
400 |
ttcttagaagagacctttggttgga |
424 |
Q |
| |
|
|| ||||| ||||||||||||||| |
|
|
| T |
10968 |
tttttaga--agacctttggttgga |
10946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 493 - 566
Target Start/End: Complemental strand, 6383 - 6310
Alignment:
| Q |
493 |
ggaagatctcctttaaaacagaagacctctgttcttctggagtaactaaaggctcgagactcctcttcttgatg |
566 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
6383 |
ggaaaatctcctttaaagcagaagacctccgttcttctggaataactaaaggctcaggactcctcttcttgatg |
6310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 493 - 566
Target Start/End: Complemental strand, 10948 - 10875
Alignment:
| Q |
493 |
ggaagatctcctttaaaacagaagacctctgttcttctggagtaactaaaggctcgagactcctcttcttgatg |
566 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
10948 |
ggaaaatctcctttaaagcagaagacctccgttcttctggaataactaaaggctcaggactcctcttcttgatg |
10875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 240 - 422
Target Start/End: Original strand, 20836906 - 20837078
Alignment:
| Q |
240 |
agattcctaaccatggaaaatt-caaatagttatttctaatatagagaatagaaatatagaatgataaaaaatgattagaaaacagtccagaaatgatcc |
338 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20836906 |
agattcctaaccatggaaaatttcaaatagttatttctaatatagagaataaaa--------tgataaaaaa-gattagaaaacagtccagaaatgatcc |
20836996 |
T |
|
| Q |
339 |
aaccaatgcccattagagggatgttatcccaaaaccatattttccattaaaataccatatgttcttagaagagacctttggttg |
422 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
20836997 |
aaccaatgcccattacagggatgttatcccaaaaccatattttccattaaaatatcatatgtttttaga--agacctttggttg |
20837078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 125 - 245
Target Start/End: Original strand, 20835563 - 20835682
Alignment:
| Q |
125 |
agatgaaacagaagatggaactgttcctatgagtttgtatgctcaaaaggctctcaatcttaactccctggggtgttgactatgaagatgaagtaaagaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
20835563 |
agatgaaacagaagatggaactgttcctttgagtttgcatgctcaaaaggctctcaatcttaactccctggggtgttgactaataagatgaagtaaa-aa |
20835661 |
T |
|
| Q |
225 |
atactcatcgacatgagattc |
245 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
20835662 |
atactcatcgacatgagattc |
20835682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 495 - 566
Target Start/End: Original strand, 20837080 - 20837151
Alignment:
| Q |
495 |
aagatctcctttaaaacagaagacctctgttcttctggagtaactaaaggctcgagactcctcttcttgatg |
566 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20837080 |
aagatctcctttaaaacagaagacctccgttcttctggagtaactaaaggctcatgactcctcttcttgatg |
20837151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 20835470 - 20835530
Alignment:
| Q |
1 |
ttcaacaaacatagcagtaaaatatagttcataagctgatattccatagtaaaagtgtgga |
61 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
20835470 |
ttcaacaaacgtagcagtaaaatatagttcataagctgatatccaatagtaaaagtgtgga |
20835530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 20770087 - 20770163
Alignment:
| Q |
73 |
aaactcatgaaaaccaagactgtgaatccagtccaaaggatgacattagctcagatgaaacagaagatggaactgtt |
149 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| ||| ||||||||||||||| |||||||| ||| || ||||||| |
|
|
| T |
20770087 |
aaactcatgagaaccaagattgtgaatccagtcaaaatgatgacattagctcatatgaaacaaaagttgaaactgtt |
20770163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 20779881 - 20779957
Alignment:
| Q |
73 |
aaactcatgaaaaccaagactgtgaatccagtccaaaggatgacattagctcagatgaaacagaagatggaactgtt |
149 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| ||| ||||||||||||||| |||||||| ||| || ||||||| |
|
|
| T |
20779881 |
aaactcatgagaaccaagattgtgaatccagtcaaaatgatgacattagctcatatgaaacaaaagttgaaactgtt |
20779957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 205 - 375
Target Start/End: Original strand, 38053497 - 38053658
Alignment:
| Q |
205 |
tatgaagatgaagtaaagaaatactcatcgacatgagattcctaaccatggaaaatt-caaatagttatttctaatatagagaatagaaatatagaatga |
303 |
Q |
| |
|
|||||| |||||||||| ||||||||||| || |||||||||||||| ||| | || ||||||||||||| ||| ||| ||||||||| ||| |
|
|
| T |
38053497 |
tatgaaaatgaagtaaa-aaatactcatcagcacgagattcctaaccaaggacattttcaaatagttatttttaagatatagaatagaa--------tga |
38053587 |
T |
|
| Q |
304 |
taaaaaatgattagaaaacagtccagaaatgatccaaccaatgcccattagagggatgttatcccaaaacca |
375 |
Q |
| |
|
| |||||| | ||||||| ||||||| |||||||| ||||||||| | ||||||||||||||||||||| |
|
|
| T |
38053588 |
tgaaaaatactacaaaaacaggccagaaaagatccaactaatgcccat-acagggatgttatcccaaaacca |
38053658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University