View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6701_low_20 (Length: 236)

Name: NF6701_low_20
Description: NF6701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6701_low_20
NF6701_low_20
[»] chr2 (2 HSPs)
chr2 (1-128)||(45402088-45402215)
chr2 (123-218)||(45401896-45401991)
[»] chr5 (2 HSPs)
chr5 (1-128)||(19611236-19611363)
chr5 (122-218)||(19611045-19611141)
[»] chr3 (2 HSPs)
chr3 (1-128)||(23361675-23361802)
chr3 (131-218)||(23361480-23361567)
[»] chr6 (2 HSPs)
chr6 (5-128)||(7599994-7600117)
chr6 (123-218)||(7599804-7599895)
[»] chr4 (3 HSPs)
chr4 (10-128)||(28462406-28462524)
chr4 (123-218)||(28462627-28462718)
chr4 (14-88)||(54188531-54188605)
[»] chr7 (2 HSPs)
chr7 (11-65)||(7710913-7710967)
chr7 (14-88)||(3367619-3367693)
[»] chr8 (1 HSPs)
chr8 (79-128)||(8835784-8835833)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 45402088 - 45402215
Alignment:
Q  1 gaaattttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaagtttgaacctgttttgcaattgtttttgcaggttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45402088 gaaattttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgtttttgcaggttt 45402187  T
Q  101 tggtattggttgaggtttcggtgttgga 128  Q
    |||| |||||||||||||||||||||||    
T  45402188 tggtgttggttgaggtttcggtgttgga 45402215  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 45401991 - 45401896
Alignment:
Q  123 gttggacactggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatc 218  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45401991 gttggacactggtggttaccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaatgaatgaataacgaataacagaatc 45401896  T

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Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 19611236 - 19611363
Alignment:
Q  1 gaaattttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaagtttgaacctgttttgcaattgtttttgcaggttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  19611236 gaaattttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattttttttgcaggttt 19611335  T
Q  101 tggtattggttgaggtttcggtgttgga 128  Q
    |||| |||||||||||||||||||||||    
T  19611336 tggtgttggttgaggtttcggtgttgga 19611363  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 19611141 - 19611045
Alignment:
Q  122 tgttggacactggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatc 218  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19611141 tgttggacattggcggttgccgaaatcgatgattgttaagcttcagctaaagcagaagcatgaacaaatgaatgaatgaataaagaataacagaatc 19611045  T

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Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 23361675 - 23361802
Alignment:
Q  1 gaaattttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaagtttgaacctgttttgcaattgtttttgcaggttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  23361675 gaaattttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattatttttgcaggttt 23361774  T
Q  101 tggtattggttgaggtttcggtgttgga 128  Q
    |||| |||||||||||||| ||||||||    
T  23361775 tggtgttggttgaggtttcagtgttgga 23361802  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 23361567 - 23361480
Alignment:
Q  131 ctggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23361567 ctggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaatgaatgaataacgaataacagaatc 23361480  T

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Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 7599994 - 7600117
Alignment:
Q  5 ttttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaagtttgaacctgttttgcaattgtttttgcaggttttggt 104  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7599994 ttttttcttccaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgtttttgcaggttttggt 7600093  T
Q  105 attggttgaggtttcggtgttgga 128  Q
     |||||||||||||| ||||||||    
T  7600094 gttggttgaggtttctgtgttgga 7600117  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 7599895 - 7599804
Alignment:
Q  123 gttggacactggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  7599895 gttggacactggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaat----gaataaagaataacagaatc 7599804  T

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Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 28462524 - 28462406
Alignment:
Q  10 tcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaagtttgaacctgttttgcaattgtttttgcaggttttggtattgg 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  28462524 tcttccaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgtttttgcaggttttggtgttgg 28462425  T
Q  110 ttgaggtttcggtgttgga 128  Q
    |||||||||| ||||||||    
T  28462424 ttgaggtttctgtgttgga 28462406  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 28462627 - 28462718
Alignment:
Q  123 gttggacactggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  28462627 gttggacactggcggttgccgaaatcgatgattgctaagcttcagctaaagcataagcatgaaca----aatgaatgaataaagaataacagaatc 28462718  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 54188605 - 54188531
Alignment:
Q  14 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaagtttgaacctgttttgcaattgt 88  Q
    |||||||||||||||| ||| ||  ||||||| ||||| ||| ||||||||| |||||   ||||||||||||||    
T  54188605 gcaaggtattattgtgctgcctatcaggtgttcgataatttgactcaatgaaatttgactgtgttttgcaattgt 54188531  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 7710913 - 7710967
Alignment:
Q  11 cttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaa 65  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||| |||||||||    
T  7710913 cttgcaaggtatgattgtgttgcatatgaggtgtttgataatttgactcaatgaa 7710967  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 3367693 - 3367619
Alignment:
Q  14 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaagtttgaacctgttttgcaattgt 88  Q
    |||||||||||||||| ||| ||  ||||||||||||| ||| ||||||||| |||||   ||||||||||||||    
T  3367693 gcaaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgt 3367619  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 8835833 - 8835784
Alignment:
Q  79 ttgcaattgtttttgcaggttttggtattggttgaggtttcggtgttgga 128  Q
    |||||||||||||||||| |||| || |||||||||||||||||||||||    
T  8835833 ttgcaattgtttttgcagttttttgtgttggttgaggtttcggtgttgga 8835784  T

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