View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6701_low_3 (Length: 556)
Name: NF6701_low_3
Description: NF6701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6701_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 38 - 534
Target Start/End: Complemental strand, 42276070 - 42275575
Alignment:
| Q |
38 |
tgtctcatcacgtggccctatcctatccgatttacacaagaagnnnnnnntagaaaaggatattctactaattttgtgatagtctaagttgattccatac |
137 |
Q |
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| T |
42276070 |
tgtctcatcatgtggccctatcctatccgatttacacaagaagaaaaaaatagaaaaggatattctactaattttgtgatagtctaagttgattccatac |
42275971 |
T |
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| Q |
138 |
tgcataaatgagaagttgaacattgtaaataagaataccgacatgtaatttgtaggcatccatacgtgtccaataatattgtccaaattggcaaaggcaa |
237 |
Q |
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| T |
42275970 |
tgcataaatgagaagttcaaccttgtaaataagaataccgacatgtaatttgtaggcatccatacgtgtccaataatattgtccaaattggcaaaggcaa |
42275871 |
T |
|
| Q |
238 |
tagaaagcaagtacaataaagcgtgtggtccttgctttaagacaatagattgtcacagatcttcttcaaacttcaaagccattggaacaacctgcacgta |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42275870 |
tagaaagcaagtacaataaagcgtgtggtccttgctttaagacaatagattgtcacagatcttcttcaaacttcaaagccattgcaacaacctgcacgta |
42275771 |
T |
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| Q |
338 |
atgtagtatcatattttgatgctttccatattctcttctcttcctaccgcaacttcatttaaagaaacctactcttagctcaaaaattgcaccaatttgt |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42275770 |
atgtagtatcatattttgatgctttccatattctcttctcttcctaccgcaactccatttaaagaaacctactcttagctcaaaaattgcaccaa-ttgt |
42275672 |
T |
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| Q |
438 |
acaagtctaagccaaaacaacttgatggcaaaatgcacaaagtctctagttatgttcccaatcctcttgcaaactatatgcttccttttgttcccac |
534 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42275671 |
acaagtctaagccaaaacaacttgatggcaaaatgcacaaagtctctagttatgttcccaatcctcttgcaaactatatgcttccttttgttcccac |
42275575 |
T |
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