View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6701_low_6 (Length: 504)
Name: NF6701_low_6
Description: NF6701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6701_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 8 - 485
Target Start/End: Complemental strand, 6185446 - 6184969
Alignment:
| Q |
8 |
agatgaaacggtggttgaaggcgaacagtttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctcca |
107 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185446 |
agatgaaacggtggttgaaggcgaacaatttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctcca |
6185347 |
T |
|
| Q |
108 |
tttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185346 |
tttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccg |
6185247 |
T |
|
| Q |
208 |
atatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagtttt |
307 |
Q |
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||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
6185246 |
atatcggactttcaatgggaattcaaggtactgaagttgcaaaagagagttcagatattgttatattagatgacaattttgcatctatcgtaacagtgtt |
6185147 |
T |
|
| Q |
308 |
aaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcacttgttatcaatttcgtagccgcggtt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |
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| T |
6185146 |
aaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcccttgttatcaatttcgttgcggcggtt |
6185047 |
T |
|
| Q |
408 |
tcagccggcgaagtaccattaacagcagttcaattattatgggtgaatttaattatggatacattaggtgctttggct |
485 |
Q |
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| T |
6185046 |
tcagccggtgaagtaccattaacagcagttcaattattatgggtgaatttgattatggatacattaggtgctttggct |
6184969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 485
Target Start/End: Complemental strand, 4236321 - 4235845
Alignment:
| Q |
9 |
gatgaaacggtggttgaaggcgaacagtttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctccat |
108 |
Q |
| |
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|||||||| ||||||||||||||||| ||||| ||||| || ||||||||||| || | || ||||| ||||| | ||||||||||||||| ||||||| |
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| T |
4236321 |
gatgaaacagtggttgaaggcgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatctctgtgatggcaagatcttctccat |
4236222 |
T |
|
| Q |
109 |
ttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccga |
208 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| || |
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| T |
4236221 |
ttgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaaccggagacggaacaaacgatgcaccagcattgaaagaagctga |
4236122 |
T |
|
| Q |
209 |
tatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagtttta |
308 |
Q |
| |
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||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
4236121 |
tattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctattgtaacagttata |
4236022 |
T |
|
| Q |
309 |
aactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcacttgttatcaatttcgtagccgcggttt |
408 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| || || ||||||| |
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| T |
4236021 |
aattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggttt |
4235922 |
T |
|
| Q |
409 |
cagccggcgaagtaccattaacagcagttcaattattatgggtgaatttaattatggatacattaggtgctttggct |
485 |
Q |
| |
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|||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
4235921 |
cagcaggcgaagttccgttaacagcagttcaattattatgggtgaatttgattatggatacattaggtgcattggct |
4235845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 422 - 485
Target Start/End: Original strand, 30441398 - 30441461
Alignment:
| Q |
422 |
accattaacagcagttcaattattatgggtgaatttaattatggatacattaggtgctttggct |
485 |
Q |
| |
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|||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
30441398 |
accattaatatcagttcaattattatgggtgaatttgattatggatacattagatgctttggct |
30441461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 174 - 393
Target Start/End: Complemental strand, 19593039 - 19592829
Alignment:
| Q |
174 |
ggaacaaacgatgcaccggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatattgttatat |
273 |
Q |
| |
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|||| ||| |||||| | ||| |||||||||| |||| | ||||| |||| |||||||||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
19593039 |
ggaagaaatgatgcatcagcactgaaagaagctaatattgaactttccatggaaattcaaggtaccgaagttgcaaaagagagctcagatattgttatat |
19592940 |
T |
|
| Q |
274 |
tagatgacaattttgcatctatagtaacagttttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgt |
373 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19592939 |
tagatgacaattttgcatctatagtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaattcattcaatt---------agtgaatgt |
19592849 |
T |
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| Q |
374 |
ggcagcacttgttatcaatt |
393 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
19592848 |
ggcagcacttgttatcaatt |
19592829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 90 - 484
Target Start/End: Complemental strand, 38357184 - 38356790
Alignment:
| Q |
90 |
atggcaagatcatctccatttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcac |
189 |
Q |
| |
|
|||||||||||||| || | ||||||||| | ||||| |||||||||| | | ||||||||||||||||| || ||||| || || ||||||||||||| |
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| T |
38357184 |
atggcaagatcatcccctatggacaaacttttgatggtgcaatgcttaagaaagaaaggtcatgtagttgcggtcacaggcgacggcacaaacgatgcac |
38357085 |
T |
|
| Q |
190 |
cggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatattgttatattagatgacaattttgc |
289 |
Q |
| |
|
| || || |||||||| ||||| || ||||| |||||||| ||||| || ||||| || ||||| ||||| ||||| || || ||||| ||||| || |
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|
| T |
38357084 |
ctgccttaaaagaagctgatataggactttctatgggaatccaaggaaccgaagtcgccaaagaaagttccgatatcgtcatcttagacgacaacttcaa |
38356985 |
T |
|
| Q |
290 |
atctatagtaacagttttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcacttgttatc |
389 |
Q |
| |
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||| | | ||| ||||||| |||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||| || |
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|
| T |
38356984 |
ttctgttgcaactgttttaaggtggggaagatgtgtttacaacaacatccagaaatttattcagtttcaactaacagtgaatgttgcagcacttgtgata |
38356885 |
T |
|
| Q |
390 |
aatttcgtagccgcggtttcagccggcgaagtaccattaacagcagttcaattattatgggtgaatttaattatggatacattaggtgctttggc |
484 |
Q |
| |
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|| || | || || ||||| | || || || || |||||| |||||||| | | ||||||||| | |||||||||||| ||||||||||||| |
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|
| T |
38356884 |
aactttattgcagcagtttcttctggtgatgttcccttaacaacagttcaacttctttgggtgaatctcattatggatacactaggtgctttggc |
38356790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 455
Target Start/End: Complemental strand, 19592824 - 19592786
Alignment:
| Q |
417 |
gaagtaccattaacagcagttcaattattatgggtgaat |
455 |
Q |
| |
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||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
19592824 |
gaagtaccattaataacagttcaattattatgggtgaat |
19592786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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