View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6701_low_9 (Length: 400)
Name: NF6701_low_9
Description: NF6701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6701_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 39 - 387
Target Start/End: Complemental strand, 42643548 - 42643200
Alignment:
| Q |
39 |
aatataacattattcctagacttctaaataccttacaccattaaatatcaaaccaaggcatgccttgttttaactcaagaaccagatccaaatgaggtga |
138 |
Q |
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| T |
42643548 |
aatataacattattcctagacttctaaataccttacaccactacatgtcaaaccaatgcatgccttgttttaactcaagaaccagatccaaatgaggtga |
42643449 |
T |
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| Q |
139 |
agaccaaaatcaactaaagcagacctggatacataactaaatgtaacccaaatcacctaaaaatatcataccacacacacgaaggacagactcacaagta |
238 |
Q |
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| T |
42643448 |
agaccaaaaacaactaaagcagacctggagacataactaaatgtaacacaaatcacctaaaaatatcataccacacacacaaaggacagactcacaagta |
42643349 |
T |
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| Q |
239 |
ataaagagacgacacataaactcttgcattaaacgacnnnnnnncaccttatttctcgaaaatcaccatgtgatgcaggaggtttgcccgaacatgtgct |
338 |
Q |
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| T |
42643348 |
ataaagagacgacacataaactcttgcattaaacgacaaaaaaacaccttatttctcgaaaatcaccatgtgatgcaggaggtttgcccgaacatgtgct |
42643249 |
T |
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| Q |
339 |
ctatctaaatgcaattgccatgaaaaaacaatgactttagaaggtgatg |
387 |
Q |
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| T |
42643248 |
ctatctaaatgcaattgccatgaaaaaacaatgactttagaaggtgatg |
42643200 |
T |
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