View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6702_low_1 (Length: 1038)
Name: NF6702_low_1
Description: NF6702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6702_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 21795036 - 21794610
Alignment:
| Q |
1 |
ataaacaatcctgtggcatatgttttgaattgaaaacagactctgatatgttccaaacgacaaagtgcaaacacctctattgtcttgactgca-atgcaa |
99 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
21795036 |
ataaacaatcttgtggcatatgttttgaattgaaaacatattctgatatgttccaaacgacaaagtgcaaacacctctattgccttgactgcatatgcaa |
21794937 |
T |
|
| Q |
100 |
atatgtaaccgttcgaataaacaataatttggttaaggttaaggttattacttgtccaagtccaaattgttttgtgcaattgaagccaaaacaattgcaa |
199 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21794936 |
atatgtaacctttcaaataaacaataatttggttaaggtta------ttacttgtccaagtccaaattgttttgtgcaattgaagccaaatgaattgcaa |
21794843 |
T |
|
| Q |
200 |
cacaatttacctaaacaagttacttttcgatgggagtctttaatttatgagtcttctattaccttcaaattcatgtgttatgcccggaaattatttcaaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21794842 |
cacaatttacctaaacaagttacttttcgatgggagtctttaatttatgagtcttctattaccttcaaattcatgtcttatgcccggaaattatttcaaa |
21794743 |
T |
|
| Q |
300 |
attttaaattggataagaaatttttggagttggcaaaaagagaaagttggaaaagatgtccaagttgctctatctatgtcgagaggattaatggatgtaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
21794742 |
attttaaattggataagaaatttttggagttggcaaaaagagaaaggtggaaaagatgtccaagttgctctatctatgtcgagagaattaatggatgtaa |
21794643 |
T |
|
| Q |
400 |
tcacatgatgtgcaggttaattaattatgcatt |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
21794642 |
tcacatgatgtgcaggttaattaattatgcatt |
21794610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 428 - 801
Target Start/End: Complemental strand, 21794583 - 21794206
Alignment:
| Q |
428 |
gcattaattaaatttatgtctaactataatttttctttctaggtgtggaagtgacttctgctacaaatgtggggtcacattgaaatattgtgagtgcatg |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21794583 |
gcattaattaaatttatgtctaactataatttttctttctaggtgtggaagtgacttctgctacaaatgtggggtcacattgaaatattgtgagtgcatg |
21794484 |
T |
|
| Q |
528 |
cgtgcaaggttcaatgttagacccagtagaattaattttggagaggtaactcannnnnnn-gatcaagtgaagccatgttgtttcaactcctcatgtcaa |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
21794483 |
cgtgcaaggttcaatgttagacccagtagaattaattttggagaggtaactctttttttttgatcaagtgaagcaacgttgtttcaactcctcatgtcaa |
21794384 |
T |
|
| Q |
627 |
ttaggttttcgcaataagttaacagaattctttagataggaattattgtttcctattttttgaaatgtttagacatcaaggtgaattctttggatagtgc |
726 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
21794383 |
ttagggtttcgcaagaagttaacagaattctttggataggaattattgtttcctttttattgaaatgtttagatatcaaggtgaattctttggatagtgc |
21794284 |
T |
|
| Q |
727 |
attgtgttgattttcgtgaagtgtttagatatagaccgagttatatcaattaaattgg---tcactatgacattatca |
801 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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|
| T |
21794283 |
attgtgttgattttcgtgaagtgtttagatatagaccgagttatatcaattaaattggtgatcaccatgacattatca |
21794206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 21788322 - 21787917
Alignment:
| Q |
18 |
atatgttttgaattgaaaacagactctgatatgttccaaacgacaaagtgcaaacacctctattgtcttgactgca-atgcaaatatgtaaccgttcgaa |
116 |
Q |
| |
|
||||||||||| ||||| ||| | ||||||||||||||||| ||||||||||| ||| ||||||| |||||||||| |||||||||||||||| ||| || |
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|
| T |
21788322 |
atatgttttgatttgaagacaaattctgatatgttccaaacaacaaagtgcaaccacttctattgccttgactgcatatgcaaatatgtaacctttcaaa |
21788223 |
T |
|
| Q |
117 |
taaacaataatttggttaaggttaaggttattacttgtccaagtccaaattgttttgtgcaattgaagccaaaacaattgcaacacaatttacctaaaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
21788222 |
taaacaataatttggttaaggttaaggttattacttgtccaagtccaaattgttctgtgaaattgaagccaaaacaattgcaacacattttacctaaaca |
21788123 |
T |
|
| Q |
217 |
agttacttttcgatgggagtctttaatttatgagtcttctattaccttcaaattcatgtgttatgcccggaaattatttcaaaattttaaattggataag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| |||| || || |||| ||||| |||||||||| |||||||| || ||||||||| | |
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|
| T |
21788122 |
agttacttttcgatgggagtctttaattcataagtcttctattccctttaagttaatgtcttatggccggaaattaattcaaaatattgaattggatatg |
21788023 |
T |
|
| Q |
317 |
aaatttttggagttggcaaaaagagaaagttggaaaagatgtccaagttgctctatctatgtcgagaggattaatggatgtaatcacatgatgtgcaggt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
21788022 |
aaatttttggagttggcaaaaagagaaagttggaaaaaatgtccaaggtgctctttctatgtcgagagaattaatggatgtaatcacatgatgtgcaggt |
21787923 |
T |
|
| Q |
417 |
taatta |
422 |
Q |
| |
|
|||||| |
|
|
| T |
21787922 |
taatta |
21787917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 21793000 - 21792633
Alignment:
| Q |
18 |
atatgttttgaattgaaaacagactctgatatgttccaaacgacaaagtgcaaacacctctattgtcttgactgca-atgcaaatatgtaaccgttcgaa |
116 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||||||||||| ||||||||||| ||| ||||||| |||||||||| | |||||||||||||| ||| || |
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|
| T |
21793000 |
atatgttttgatttgaaaacaaattctgatatgttccaaacaacaaagtgcaaccacttctattgccttgactgcatacgcaaatatgtaacctttcaaa |
21792901 |
T |
|
| Q |
117 |
taaacaataatttggttaaggttaaggttattacttgtccaagtccaaattgttttgtgcaattgaagccaaaacaattgcaacacaatttacctaaaca |
216 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
21792900 |
taagcaattatttggttaaggttaaggttattacttgtccaagtccaaattgttttgttgaattgaagccaaaacaattgcaacatattttacctaaaca |
21792801 |
T |
|
| Q |
217 |
agttacttttcgatgggagtctttaatttatgagtcttctattaccttcaaattcatgtgttatgcccggaaattatttcaaaattttaaattggataag |
316 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||| |||| || ||||| | ||| ||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
21792800 |
agttacttttcgatggaggtctttaatttgtgagtcttctatctccttgaagttcatatcttacgccaggaaattatttcaaaattttaaattggacaag |
21792701 |
T |
|
| Q |
317 |
aaatttttggagttggcaaaaagagaaagttggaaaagatgtccaagttgctctatctatgtcgagag |
384 |
Q |
| |
|
| || || |||||||||||| |||||| |||| ||||||||| | |||||| ||||| ||||||| |
|
|
| T |
21792700 |
agtttagtgaagttggcaaaaaaagaaaggtggagaagatgtcctaagtgctctttctatatcgagag |
21792633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 849 - 1027
Target Start/End: Complemental strand, 21794203 - 21794024
Alignment:
| Q |
849 |
tttcattagcaattaaatcatttatacacgtcggtacatcatcaaagatatagaagctaagtaaggatgtggctgcctatgttgatttgtg-ttaacctc |
947 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| || |||||||| ||||||||| ||||||| |
|
|
| T |
21794203 |
tttcattagcaattaaattatttatacacgtcggtacatcatccaagatatagaagctaggtaaggatttgtctgcctatactgatttgtggttaacctt |
21794104 |
T |
|
| Q |
948 |
attcacttgtctcttaatgaactcaaggtgaaagtttgttaaataaagagaacaatagctcaaaattcggtgatgtccat |
1027 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21794103 |
attgacttgtctcttaatgaactcaacatgaaagtttgttaaataaagagaacaatagctcaaaattcggtgatgtccat |
21794024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 429 - 500
Target Start/End: Complemental strand, 21787885 - 21787812
Alignment:
| Q |
429 |
cattaattaaatttatgtctaactata--atttttctttctaggtgtggaagtgacttctgctacaaatgtggg |
500 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
21787885 |
cattaattaaatttatgtctaactatataattattctttctaggtgtggatgtgacttctgctacaactgtggg |
21787812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 25013519 - 25013570
Alignment:
| Q |
311 |
gataagaaatttttggagttggcaaaaagagaaagttggaaaagatgtccaa |
362 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
25013519 |
gataggaagtttttggagttggctaaaagagaaaagtggaaaagatgtccaa |
25013570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 24930438 - 24930508
Alignment:
| Q |
347 |
tggaaaagatgtccaagttgctctatctatgtcgagaggattaatggatgtaatcacatgatgtgcaggtt |
417 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| |||| | || ||||||| | ||||||| |||||||| |
|
|
| T |
24930438 |
tggaagagatgtccaaattgctctatctatgtcaagagaagtagtggatgtgaacacatgaaatgcaggtt |
24930508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 25345806 - 25345744
Alignment:
| Q |
155 |
ccaagtccaaattgttttgtgcaattgaagccaaaacaattgcaacacaatttacctaaacaa |
217 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||||| ||| |||||| ||| ||||||||| |
|
|
| T |
25345806 |
ccaagtccaaattgttttgtgaaatataagccgaaacatttgaaacacattttgcctaaacaa |
25345744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 417
Target Start/End: Complemental strand, 24976478 - 24976369
Alignment:
| Q |
308 |
ttggataagaaatttttggagttggcaaaaagagaaagttggaaaagatgtccaagttgctctatctatgtcgagaggattaatggatgtaatcacatga |
407 |
Q |
| |
|
|||||| | ||||||||||||||||| || ||| | | ||| | ||||| |||| |||||||||||||||| |||| | | |||||||| | ||||||| |
|
|
| T |
24976478 |
ttggatgataaatttttggagttggctaacagaaagaagtggcagagatgcccaaattgctctatctatgtcaagagaagtgatggatgtgaacacatga |
24976379 |
T |
|
| Q |
408 |
tgtgcaggtt |
417 |
Q |
| |
|
|||||||| |
|
|
| T |
24976378 |
aatgcaggtt |
24976369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 309 - 384
Target Start/End: Original strand, 26104432 - 26104507
Alignment:
| Q |
309 |
tggataagaaatttttggagttggcaaaaagagaaagttggaaaagatgtccaagttgctctatctatgtcgagag |
384 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||| ||| | ||||||||||| |||||||| |||||| |||| |
|
|
| T |
26104432 |
tggatatgaaatttttggagttggctaaaagagaaaaatggcagagatgtccaagatgctctatgtatgtccagag |
26104507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 848 - 1004
Target Start/End: Original strand, 9834473 - 9834630
Alignment:
| Q |
848 |
atttcattagcaattaaatcatttatacacgtcggtacatcatcaaagatatagaagctaagtaaggatgtggctgcctatgttgatttgt-gttaacct |
946 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||| ||||||||| ||| | |||||||||| || |||| ||| | |||| ||| || | ||||| |
|
|
| T |
9834473 |
atttcattagcaatcaaattatttatacatgtcggtaaatcatcaaaaatacgggagctaagtaaagacgtggatgcatttgttaattcgtggacaacct |
9834572 |
T |
|
| Q |
947 |
cattcacttgtctcttaatgaactcaaggtgaaagtttgttaaataaagagaacaata |
1004 |
Q |
| |
|
| ||| ||||||| || | ||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
9834573 |
cgttcgcttgtcttctagtaaacccaacacgagagtttgttaaataaagagaacaata |
9834630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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