View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6702_low_10 (Length: 252)

Name: NF6702_low_10
Description: NF6702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6702_low_10
NF6702_low_10
[»] chr8 (2 HSPs)
chr8 (11-103)||(10279184-10279276)
chr8 (192-252)||(10279365-10279425)
[»] chr6 (1 HSPs)
chr6 (45-103)||(15879710-15879768)
[»] chr2 (1 HSPs)
chr2 (15-103)||(14908872-14908960)
[»] chr7 (1 HSPs)
chr7 (45-103)||(18289622-18289680)
[»] chr4 (1 HSPs)
chr4 (45-103)||(13919111-13919169)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 10279184 - 10279276
Alignment:
Q  11 gacatcaatctcacttttgtggttgttcatagcttaatgtgattatccaaccgagtttatgcttctccaaaagtccgaacattatgatgaact 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10279184 gacatcaatctcacttttgtggttgttcatagcttaatgtgattatccaaccgagtttatgcttctccaaaagtccgaacattatgatgaact 10279276  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 10279365 - 10279425
Alignment:
Q  192 gaaattactacaattttgatcttttacaatgatgtatcannnnnnncaattaggtctaatt 252  Q
    ||||||||| |||||||| ||||||||||||||||||||       |||||||||||||||    
T  10279365 gaaattacttcaattttggtcttttacaatgatgtatcatttttttcaattaggtctaatt 10279425  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 15879710 - 15879768
Alignment:
Q  45 taatgtgattatccaaccgagtttatgcttctccaaaagtccgaacattatgatgaact 103  Q
    |||||||||||||||||| |||||| ||| || | ||||||| ||||||||||||||||    
T  15879710 taatgtgattatccaacccagtttacgctcctgcgaaagtcctaacattatgatgaact 15879768  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 14908872 - 14908960
Alignment:
Q  15 tcaatctcacttttgtggttgttcatagcttaatgtgattatccaaccgagtttatgcttctccaaaagtccgaacattatgatgaact 103  Q
    |||||||||  |||||||||| || ||||||||||||||||||||||  | ||||  ||||   |||||||  ||||||||||||||||    
T  14908872 tcaatctcatatttgtggttgatcttagcttaatgtgattatccaactcattttaaccttccaaaaaagtcacaacattatgatgaact 14908960  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 18289680 - 18289622
Alignment:
Q  45 taatgtgattatccaaccgagtttatgcttctccaaaagtccgaacattatgatgaact 103  Q
    |||||||||||||||||| |||||| ||| |  | ||||||| ||||||||||||||||    
T  18289680 taatgtgattatccaacctagtttacgctcccgcgaaagtcctaacattatgatgaact 18289622  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 13919111 - 13919169
Alignment:
Q  45 taatgtgattatccaaccgagtttatgcttctccaaaagtccgaacattatgatgaact 103  Q
    |||||||||||||||||| ||||||  || || | ||||||| ||||||||||||||||    
T  13919111 taatgtgattatccaacctagtttacactcctgcgaaagtcctaacattatgatgaact 13919169  T

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