View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6702_low_11 (Length: 239)
Name: NF6702_low_11
Description: NF6702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6702_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 37135370 - 37135153
Alignment:
| Q |
18 |
agaatatacataaggccatgccacaattgcctctgctttctctttatctttcttttcctctgtctttcctactgcttcaatactcaccaaatctgcataa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135370 |
agaatatacataaggccatgccacaattgcctctgctttctctttatctttcttttcctctgtctttcctactgcttcaatactcaccaaatctgcataa |
37135271 |
T |
|
| Q |
118 |
ccgaatttctttcttagtagagatgccagtttaactgagtcaatctcttctccagttacttctatttgatccttgttatctccttttatagttgtacctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135270 |
ccgaatttctttcttagtagagatgccagtttaactgagtcaatctcttctccagttacttctatttgatccttgttatctccttttatagttgtacctt |
37135171 |
T |
|
| Q |
218 |
ccactcctgaatattttt |
235 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
37135170 |
ccactcctgaatattttt |
37135153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 65 - 235
Target Start/End: Original strand, 37131073 - 37131243
Alignment:
| Q |
65 |
ctttcttttcctctgtctttcctactgcttcaatactcaccaaatctgcataaccgaatttctttcttagtagagatgccagtttaactgagtcaatctc |
164 |
Q |
| |
|
|||||||||||||||||||||| || | ||| ||||||||| ||||||| || ||||||||||||||| ||||||| ||| ||||||| || || | |
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| T |
37131073 |
ctttcttttcctctgtctttcccacaggaccaacactcaccaattctgcatgacagaatttctttcttagcagagatgtgagtctaactgaatctatttg |
37131172 |
T |
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| Q |
165 |
ttctccagttacttctatttgatccttgttatctccttttatagttgtaccttccactcctgaatattttt |
235 |
Q |
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|||||| ||||| ||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
37131173 |
ttctcctgttacctctatttgatccttgttttctccttgtatagctgtaccttctactcctgaatattttt |
37131243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 37119350 - 37119516
Alignment:
| Q |
64 |
tctttcttttcctctgtctttcctactgcttcaatactcaccaaatctgcataaccgaatttctttcttagtagagatgccagtttaactgagtcaatct |
163 |
Q |
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|
||||||||||| ||| ||||| | ||| | ||| ||||||||||||||||| || |||||||||||| |||||| ||| |||||| ||| ||| || | |
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| T |
37119350 |
tctttcttttcttctttcttttcaacttcaccaacactcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctattt |
37119449 |
T |
|
| Q |
164 |
cttctccagttacttctatttgatccttgttatctccttttatagttgtaccttccactcctgaata |
230 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||||||||| || || || ||||||||||||||| |
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| T |
37119450 |
gttctccagttacctctatttgatccttgctatctccttttacagctgcactttccactcctgaata |
37119516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 235
Target Start/End: Original strand, 37125067 - 37125182
Alignment:
| Q |
120 |
gaatttctttcttagtagagatgccagtttaactgagtcaatctcttctccagttacttctatttgatccttgttatctccttttatagttgtaccttcc |
219 |
Q |
| |
|
||||||||||||||| ||| ||| ||| |||||||||| || | |||||| || || || |||| ||||||| ||| ||||| ||||| || || |||| |
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| T |
37125067 |
gaatttctttcttagcagacatgtgagtctaactgagtctatttattctcctgtaacctccattttatccttgctatgtccttgtatagctgcactttcc |
37125166 |
T |
|
| Q |
220 |
actcctgaatattttt |
235 |
Q |
| |
|
|||||| ||||||||| |
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| T |
37125167 |
actcctaaatattttt |
37125182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 37124990 - 37125045
Alignment:
| Q |
29 |
aaggccatgccacaattgcctctgctttctctttatctttcttttcctctgtcttt |
84 |
Q |
| |
|
|||||||||||||||||| |||| |||||| || ||||||||||||||| ||||| |
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|
| T |
37124990 |
aaggccatgccacaattggctcttctttcttttcttctttcttttcctctttcttt |
37125045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 20269302 - 20269085
Alignment:
| Q |
18 |
agaatatacataaggccatgccacaattgcctctgctttctctttatctttcttttcctctgtctttcctactgcttcaatactcaccaaatctgcataa |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20269302 |
agaatatacacaaggccatgccacaattgcctctgctttctctttatctttcttttcctctgtctttcctactgcttcaatactcaccaaatctgcataa |
20269203 |
T |
|
| Q |
118 |
ccgaatttctttcttagtagagatgccagtttaactgagtcaatctcttctccagttacttctatttgatccttgttatctccttttatagttgtacctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20269202 |
ccgaatttctttcttagtagagatgccagtttaactgagtcaatctcttctccagttacttctatttgatccttgttatctccttttatagttgcacctt |
20269103 |
T |
|
| Q |
218 |
ccactcctgaatattttt |
235 |
Q |
| |
|
|||||||||||||||||| |
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| T |
20269102 |
ccactcctgaatattttt |
20269085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 235
Target Start/End: Complemental strand, 1194083 - 1193915
Alignment:
| Q |
67 |
ttcttttcctctgtctttcctactgcttcaatactcaccaaatctgcataaccgaatttctttcttagtagagatgccagtttaactgagtcaatctctt |
166 |
Q |
| |
|
|||||||||||| ||||| | ||| | ||| ||||||||| ||||||| || ||||||||||||||| ||| ||| ||| |||||||||| || | || |
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| T |
1194083 |
ttcttttcctctttcttttccacttcaccaacactcaccaattctgcatgacagaatttctttcttagcagaaatgtgagtctaactgagtctatttgtt |
1193984 |
T |
|
| Q |
167 |
ctccagttacttctatttgatccttgttatctccttttatagttgtaccttccactcctgaatattttt |
235 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||||||||||||| || || |||||||||||||||||||| |
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|
| T |
1193983 |
ctcctgttatctctatttgatccttgctatctccttttatagctgcactttccactcctgaatattttt |
1193915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 31296961 - 31297124
Alignment:
| Q |
70 |
ttttcctctgtctttcctactgcttcaatactcaccaaatctgcataaccgaatttctttcttagtagagatgccagtttaactgagtcaatctcttctc |
169 |
Q |
| |
|
||||||||| ||||| | ||| | ||| ||||||||| ||||||| || |||||||||||||| ||||||| | | |||||||||| || | ||||| |
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|
| T |
31296961 |
ttttcctctttcttttccacttcaccaacactcaccaattctgcatgacataatttctttcttagcagagatgtgactctaactgagtctatttgttctc |
31297060 |
T |
|
| Q |
170 |
cagttacttctatttgatccttgttatctccttttatagttgtaccttccactcctgaatattt |
233 |
Q |
| |
|
| |||| ||||||||||||||| ||||| ||||||||| || || |||||||||||||||||| |
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|
| T |
31297061 |
ctgttatctctatttgatccttgctatctgcttttatagctgcactttccactcctgaatattt |
31297124 |
T |
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