View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6702_low_2 (Length: 652)
Name: NF6702_low_2
Description: NF6702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6702_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 586; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Original strand, 38567513 - 38568154
Alignment:
| Q |
1 |
accaaaccatacagccaaagcataacctaggaacataagaaacataaatgtgcctacacctactccagatataaaaccttcaaaaactcctgatttgtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567513 |
accaaaccatacagccaaagcataacctaggaacataagaaacataaatgtgcctacacctactccagatataaaaccttcaaaaactcctgatttgtaa |
38567612 |
T |
|
| Q |
101 |
ccatctacaagatgtttgctgtaattagctactgcttgcttttcaccagtaaaggaagcaacctgaaaatacacacaacatgaggaaggaaattaggcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
38567613 |
ccatctacaagatgtttgctgtaattagctactgcttgcttttcaccagtaaaggaagcaacctgaaaatacacacaacacgaggaaggaagttaggcta |
38567712 |
T |
|
| Q |
201 |
catgtttatcatagcactgccacacataagcagcaagaaaataaaaagcaacatgtatgtttcgttccactactggactgaggcaaaattaattttagaa |
300 |
Q |
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| T |
38567713 |
catgtttatcatagcactgccacacataagcagcaagaaaataaaaagcaacatgtatgtttcgttccactactggactgaggcaaaattaattttagaa |
38567812 |
T |
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| Q |
301 |
gtgtagaaatgaatttgatatgtttggatgttatcaaatatagttgattttgacccacttttaaacctcaaaattattgttcaacacacttttgcatgaa |
400 |
Q |
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| T |
38567813 |
gtgtagaaatgaatttgatatgtttggatgttatcaaatatagttgattttgacccacttttaaacctcaaatttattgttcaacacacttttgcatgaa |
38567912 |
T |
|
| Q |
401 |
ttttacgttcaatttttagccacagtcaatttttgttactgtagaaccaaactcacactta---------gaagtttgcaaatttacttctgacaacata |
491 |
Q |
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| T |
38567913 |
ttttacgttcaacttttagccacagtcaatttttgttactgcagaaccaaactcacacttagaagttattgaagtttgcaaatttacttctgacaacata |
38568012 |
T |
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| Q |
492 |
ccgttcttattgagccaattgtctgttcaacaacatgtgcagcttttgcataagcagtttgacctttagaagccatcctgcctatgattacagccatggc |
591 |
Q |
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| T |
38568013 |
ccgttcttattgagccaattgtctgttcaacaacatgcgcagcttttgcataagcagtttgacctttagaagccatcctgcctatgattacagccatggc |
38568112 |
T |
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| Q |
592 |
agcacccgacacaacaagaagtggaagtgttgacatcaatac |
633 |
Q |
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| T |
38568113 |
agcacccgacacaacaagaagtggaagtgttgacatcaatac |
38568154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 479 - 629
Target Start/End: Original strand, 38526859 - 38527009
Alignment:
| Q |
479 |
ttctgacaacataccgttcttattgagccaattgtctgttcaacaacatgtgcagcttttgcataagcagtttgacctttagaagccatcctgcctatga |
578 |
Q |
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|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38526859 |
ttctaacagcataccgttcttattgagccaatggtctgttcaacaacatgtgcagcttttgcataagcagtttgacctttagaagccattctgcctatga |
38526958 |
T |
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| Q |
579 |
ttacagccatggcagcacccgacacaacaagaagtggaagtgttgacatca |
629 |
Q |
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| T |
38526959 |
taacagccatggcagcacctgacacaacaagaaatggaagtgttgacatca |
38527009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 38526385 - 38526562
Alignment:
| Q |
1 |
accaaaccatacagccaaagcataacctaggaacataagaaacataaatgtgcctacacctactccagatataaaaccttcaaaaactcctgatttgtaa |
100 |
Q |
| |
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|||||||||||| |||||||||||||| ||| |||| |||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||||| |
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| T |
38526385 |
accaaaccatactgccaaagcataaccacagaaaataacaaacataactgtgcctagtcctgctccagctatagtaccttcaaaaactcctgatttgtaa |
38526484 |
T |
|
| Q |
101 |
ccatctacaagatgtttgctgtaattagctactgcttgcttttcaccagtaaaggaagcaacctgaaaatacacacaa |
178 |
Q |
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| T |
38526485 |
gcatctacaagaaatttgctataactagatactgcttgcttttccccagtaaaggatgcaacctgaaaatatacacaa |
38526562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 10860016 - 10859936
Alignment:
| Q |
251 |
acatgtatgtttcgttccactactggactgaggcaaaattaattttagaagtgtagaaatgaatttgatatgtttggatgtt |
332 |
Q |
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| T |
10860016 |
acatgtatgtttggttccacttttggaa-gaggcaaaattcattatagaggtgtagaaatgattttgacctgtttgaatgtt |
10859936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 7262988 - 7263060
Alignment:
| Q |
279 |
tgaggcaaaattaattttagaagtgtagaaatgaatttgatatgtttggatgttatcaaatatagttgatttt |
351 |
Q |
| |
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|||||||||||| ||| ||||||||||||| ||| ||||| || || ||||||| || | |||| |||||||| |
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| T |
7262988 |
tgaggcaaaattgattctagaagtgtagaattgattttgacattttaggatgttctcgagtataattgatttt |
7263060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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