View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6702_low_3 (Length: 616)
Name: NF6702_low_3
Description: NF6702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6702_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 16 - 616
Target Start/End: Original strand, 38566927 - 38567527
Alignment:
| Q |
16 |
cactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtgga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38566927 |
cactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtgga |
38567026 |
T |
|
| Q |
116 |
tcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatc |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567027 |
tcatagaatctctctaccaaactgataattgtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatc |
38567126 |
T |
|
| Q |
216 |
cattaaatatcagctcctcaggtcttgccggataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatc |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567127 |
cattaaatatcagctcctcaggtcttgccggataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatc |
38567226 |
T |
|
| Q |
316 |
ataagcatctatctctggcctccttttaattgtctcaaacattttgtaagccgccgcctgacctgccgcaaaagcactcaaaccagatgatgcctggcca |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567227 |
ataagcatctatctctggcctccttttaattgtctcaaacattttgtaagccgccgcccgacctgccgcaaaagcactcaaaccagatgatgcctggcca |
38567326 |
T |
|
| Q |
416 |
agagacctnnnnnnntacatatccatatgaagaaacaagaattaatgtaattaaggaactttcaaattgacttagcatgggggtgcataaaaatgaaggt |
515 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38567327 |
agagacctaaaaaaatacatatccatatgaagaaacgagaattaatgtaattaaggaactttcaaattgacttagcatggaggtgcataaaaatgaaggt |
38567426 |
T |
|
| Q |
516 |
accacttacatggaagcagttaacacgaccataatcacattaatcactgtgcctccattatatcctttttccatgaccatctttgcaccaaaccatacag |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567427 |
accacttacatggaagcagttaacacgaccataatcacattaatcaccgtgcctccattatatcctttttccatgaccatctttgcaccaaaccatacag |
38567526 |
T |
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| Q |
616 |
c |
616 |
Q |
| |
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| T |
38567527 |
c |
38567527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 613
Target Start/End: Original strand, 38525802 - 38526396
Alignment:
| Q |
16 |
cactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtgga |
115 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
38525802 |
cactggctcctggctgacaagaccaattttccctctgatccacctaagctgaagttctttcatgttaattccatcgataagtacttcaccggcctgtgga |
38525901 |
T |
|
| Q |
116 |
tcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatc |
215 |
Q |
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||||||||||| ||||||||| | |||| ||| |||||||||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||| |
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| T |
38525902 |
tcatagaatctttctaccaaactaataactgtggactttccacttccactttgtccaaccaatgccgcggttgttccgcttgatatatgaagagagaatc |
38526001 |
T |
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| Q |
216 |
cattaaatatcagctcctcaggtcttgccggataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatc |
315 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38526002 |
cattgaatatcagctcctcaggtcttgccggataactgaaataaacttctttcaactctatctcaccttgaatatcctctaatatttttccatttggatc |
38526101 |
T |
|
| Q |
316 |
ataagcatctatctctggcctccttttaattgtctcaaacattttgtaagccgccgcctgacctgccgcaaaagcactcaaaccagatgatgcctggcca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || | ||||||||||||| |
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| T |
38526102 |
ataagcatctatctctggcctccttttaattgtctcaaacattttgtaagccgccgcctgacccgccgcaaaagcactcatacttggtgatgcctggcca |
38526201 |
T |
|
| Q |
416 |
agagacctnnnnnnntacatatccatatgaagaaacaagaattaatgtaattaaggaactttcaaattgacttagcatgggggtgcataaaaatgaaggt |
515 |
Q |
| |
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|||||||| ||||||||||| | | | | | ||||| ||| ||||||||||||||| | || ||| || | ||||||||||| ||| |
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| T |
38526202 |
agagacctaaaaatacacatatccataag-atatatattttttaatctaaataaggaactttcaaactttattggcaaggatattcataaaaatgatggt |
38526300 |
T |
|
| Q |
516 |
accacttacatggaagcagttaacacgaccataatcacattaatcactgtgcctccattatatcctttttccatgaccatctttgcaccaaaccatac |
613 |
Q |
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|||||||||||||| ||||||||| | ||||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
38526301 |
--tacttacatggaagctgttaacacggcgataatcacattaatcacggtgccaccattatatcctttttcaatgatcatctttgcaccaaaccatac |
38526396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 51199554 - 51199472
Alignment:
| Q |
95 |
agaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaa |
177 |
Q |
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||||||||||| |||||||||||||| |||||||||| |||| ||| || ||| || |||||||| |||||||| || ||||| |
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| T |
51199554 |
agaacttcaccagcctgtggatcataaaatctctctatcaaactgacaactgtggattttccactcccactttgccctaccaa |
51199472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 112 - 252
Target Start/End: Complemental strand, 51145548 - 51145408
Alignment:
| Q |
112 |
tggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatg-aagaga |
210 |
Q |
| |
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|||||||||||||||||||| |||| | | || ||| || || |||||||||||||| || ||||| |||| || || ||||| |||| ||| |||||| |
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| T |
51145548 |
tggatcatagaatctctctatcaaactaacaactgtggatttcccacttccactttgccctaccaaagctgcagtagtgccgcttggta-atgaaagaga |
51145450 |
T |
|
| Q |
211 |
gaatccattaaatatcagctcctcaggtcttgccggataact |
252 |
Q |
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|||||||| |||||||| || || ||||||| |||||||| |
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| T |
51145449 |
aaatccattgaatatcagttcatctggtcttgtaggataact |
51145408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 112 - 252
Target Start/End: Complemental strand, 51156689 - 51156549
Alignment:
| Q |
112 |
tggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatg-aagaga |
210 |
Q |
| |
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|||||||||||||||||||| |||| | | || ||| || || |||||||||||||| || ||||| |||| || || ||||| |||| ||| |||||| |
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| T |
51156689 |
tggatcatagaatctctctatcaaactaacaactgtggatttcccacttccactttgccctaccaaagctgcagtagtgccgcttggta-atgaaagaga |
51156591 |
T |
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| Q |
211 |
gaatccattaaatatcagctcctcaggtcttgccggataact |
252 |
Q |
| |
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|||||||| |||||||| || || ||||||| |||||||| |
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| T |
51156590 |
aaatccattgaatatcagttcatctggtcttgtaggataact |
51156549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 51212687 - 51212627
Alignment:
| Q |
108 |
cctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttg |
168 |
Q |
| |
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||||||||||||| |||||||||| |||||| || | ||| || |||||||| |||||||| |
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| T |
51212687 |
cctgtggatcataaaatctctctatcaaatttatcactgttgattttccactcccactttg |
51212627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 49737314 - 49737396
Alignment:
| Q |
95 |
agaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaa |
177 |
Q |
| |
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|||| |||||| ||||||||||||| |||||||||| |||| | |||| ||||| || ||||| ||||||||||| ||||| |
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| T |
49737314 |
agaatttcaccaccctgtggatcataaaatctctctatcaaactaataaccgtcgatttcccactcccactttgtcctaccaa |
49737396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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