View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6702_low_6 (Length: 337)
Name: NF6702_low_6
Description: NF6702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6702_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 55717548 - 55717866
Alignment:
| Q |
19 |
attaccttttcttcttattcttttcctctacgagtttctgcttcttgctttgaacacttcgattcatcatcaaactaggtttgacaaggcttccaacaca |
118 |
Q |
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| T |
55717548 |
attaccttttcttcttattcttttcctctacgagtttctgcttcttgctttgaacacttcgattcatcatcaaactaggtttgacaaggcttccaacaca |
55717647 |
T |
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| Q |
119 |
aacagttccttcaatggaattagggattcctgaaattctaacccaactcacatctttactagcaaggttataccaacatagtttcttactatcttgttca |
218 |
Q |
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| T |
55717648 |
aacagttccttcaatggaattagggattcctgaaattctaacccaactcacatctttactagcaaggttataccaacatagtttcttactatcttgttca |
55717747 |
T |
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| Q |
219 |
aacagaaccttatccccatttctcgaataacccaacggcttcaaagatttcatcaatttcacatcacgcggttgccccaccgtaaacattttacaccacg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55717748 |
aacagaaccttatccccatttctcgaataacccaacggcttcaaagatttcatcaatttcacatcacgcggttgccccaccgtaaacattttacaccacg |
55717847 |
T |
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| Q |
319 |
aatcatgcaatccatactc |
337 |
Q |
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|||||||| |||||||||| |
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| T |
55717848 |
aatcatgcgatccatactc |
55717866 |
T |
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