View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6702_low_7 (Length: 306)
Name: NF6702_low_7
Description: NF6702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6702_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 39397542 - 39397833
Alignment:
| Q |
1 |
aatgacccttttctatatgcttccctctcctataatattcagctatatcaagtggttcagccaaaagtttatagaattgtgaagcgttgacccatttggc |
100 |
Q |
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||||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
39397542 |
aatgacccttttccatatgcttcccttgcttataatagtcagctatatcaagtggttcagccaaaagcttatagaattgtgaagcgcagacccatttggc |
39397641 |
T |
|
| Q |
101 |
tctttggtcaaagccacgaggtagttcannnnnnnccaacatatcaatcacattgtcccagaatctagcaagtttgtgatggacgatgttggcgttcatg |
200 |
Q |
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||||||||||||| || | ||||| ||| | |||||||||||||| |||||||||||||||| ||||||| | ||| ||||| | | |||| |
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| T |
39397642 |
tctttggtcaaagtcatgtggtagctcatttttttcaaacatatcaatcacgctgtcccagaatctagcgagtttgtaacggatcttgttgacttccatg |
39397741 |
T |
|
| Q |
201 |
tgtactttggtaggtcctcttgttttgaatgagtcatagtatcccatttgatcatcttgtttatcacaccaacttttgtacatttctatttg |
292 |
Q |
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|||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
39397742 |
tgtactttggcagatcctcttgttttgaatgtgtcatagtatcccatttgatcatcttgtttatcacacctacttttgtacaattctatttg |
39397833 |
T |
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