View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6702_low_8 (Length: 278)

Name: NF6702_low_8
Description: NF6702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6702_low_8
NF6702_low_8
[»] scaffold0428 (3 HSPs)
scaffold0428 (1-266)||(2315-2580)
scaffold0428 (2-212)||(15074-15278)
scaffold0428 (87-213)||(13771-13896)
[»] chr6 (11 HSPs)
chr6 (1-266)||(33258194-33258459)
chr6 (1-266)||(33414568-33414831)
chr6 (44-242)||(31564920-31565117)
chr6 (69-266)||(33269541-33269740)
chr6 (1-136)||(33293102-33293237)
chr6 (146-245)||(33384049-33384148)
chr6 (3-243)||(33395074-33395315)
chr6 (2-212)||(33278975-33279179)
chr6 (1-90)||(28873002-28873091)
chr6 (87-226)||(33406911-33407049)
chr6 (87-213)||(33280357-33280482)
[»] chr2 (1 HSPs)
chr2 (3-245)||(17447719-17447961)


Alignment Details
Target: scaffold0428 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 2580 - 2315
Alignment:
Q  1 tgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2580 tgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatc 2481  T
Q  101 cgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2480 cgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcag 2381  T
Q  201 aagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2380 aagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 2315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 15074 - 15278
Alignment:
Q  2 gatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatcc 101  Q
    |||||||||||| || || | ||||||||| |||||| ||| ||||||| |||||||||| || |  ||||||||||||| ||| ||||| |||||||||    
T  15074 gatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctcttatcagctgacaagaaatcc 15172  T
Q  102 gggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcaga 201  Q
    || |  |||  |    |||||||||| |||||||| || || ||||||||||||  |||||||||||||||| ||| ||||||||||||||| |||||||    
T  15173 ggcaagctacta----aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcaga 15267  T
Q  202 agtgagaaatt 212  Q
    ||| |||||||    
T  15268 agttagaaatt 15278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 213
Target Start/End: Original strand, 13771 - 13896
Alignment:
Q  87 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 186  Q
    ||||| ||||||||||| ||| ||  ||  |||||| ||||| |||| || || || |||||||| ||||||| ||||| ||||||| ||| |||| ||     
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtaccta-cattcacgattcacgcattggttttctatttgaagttaactgtgatact 13869  T
Q  187 gactttgttggcagaagtgagaaattt 213  Q
    |||||| ||||||||||||||||||||    
T  13870 gacttttttggcagaagtgagaaattt 13896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 33258459 - 33258194
Alignment:
Q  1 tgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258459 tgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatc 33258360  T
Q  101 cgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258359 cgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcag 33258260  T
Q  201 aagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258259 aagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 33258194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 33414831 - 33414568
Alignment:
Q  1 tgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatc 100  Q
    ||||||||||||||||||||| ||| ||||| ||||| |||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  33414831 tgatggactgtaagaaagctcttgctgaaacggaaggcgatcttgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctgataagaaatc 33414732  T
Q  101 cgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcag 200  Q
    ||| ||||||||||  |||||||||||||||||||| || || |||| |||  |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  33414731 cggaagactagcagctgaaggaagaatcggtacata-cattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcag 33414633  T
Q  201 aagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 266  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| |||  || ||||||||||||    
T  33414632 aagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggttc 33414568  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 44 - 242
Target Start/End: Original strand, 31564920 - 31565117
Alignment:
Q  44 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 143  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  |||||||||||||||||||| || ||     
T  31564920 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacata-cattca 31565018  T
Q  144 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgca 242  Q
    |||||||| |||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||||||| | ||||||||||||||    
T  31565019 cgattcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

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Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 69 - 266
Target Start/End: Complemental strand, 33269740 - 33269541
Alignment:
Q  69 aaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatat---cactcgcgattcacacattggtgttcta 165  Q
    ||||||||||||||||||||||||||||| || |  ||||||||||  |||| ||||||||||||||||   || || | || ||  ||| |||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  166 attgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggtt 265  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||  || |||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggtt 33269542  T

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Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 33293237 - 33293102
Alignment:
Q  1 tgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatc 100  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||  | ||||||| ||||  |||||||||||||||| |||||||||||||||    
T  33293237 tgatggactgtaagaaagctcatgctgaaacagaaggtgatcttgaaaaggtgaaagcatacctcagaaaaaagggtctctcattcgctgataagaaatc 33293138  T
Q  101 cgggagactagcagaagaaggaagaatcggtacata 136  Q
    | | ||||||||||  ||||||||||| ||||||||    
T  33293137 cagaagactagcagctgaaggaagaattggtacata 33293102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 33384148 - 33384049
Alignment:
Q  146 attcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 245  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  33384148 attcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgcaatgcaagt 33384049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 33395315 - 33395074
Alignment:
Q  3 atggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccg 102  Q
    |||||||||||||||||    ||||||||  ||||||||||||||||| | ||| |||| || |  | ||||||||||||||| ||||| ||||||||||    
T  33395315 atggactgtaagaaagccttagccgaaactaaaggtgatcttgaaaaggcccaatcataccttagaacaaagggtctctcatcagctgacaagaaatccg 33395216  T
Q  103 ggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttgg--cag 200  Q
    | || |||||||  |||||||||||||||| ||| || |  |||| ||| |||   |||||| |||||||||||| |||||||||||||||||||  |||    
T  33395215 gtaggctagcagctgaaggaagaatcggtaaata-cattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttggcacag 33395117  T
Q  201 aagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 243  Q
    |||||| | ||| |||||||||||||  |||||| ||||||||    
T  33395116 aagtgatagattcaaggagttggttgctgatctttcaatgcaa 33395074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 33279179 - 33278975
Alignment:
Q  2 gatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatcc 101  Q
    |||||||||||| || || | ||||||||| |||||| ||| ||||||| |||||||||| || |  ||||||||||||| ||| ||||| |||||||||    
T  33279179 gatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctcttatcagctgacaagaaatcc 33279081  T
Q  102 gggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcaga 201  Q
    || |  |||  |    |||||||||| |||||||| || || ||||||||||||  |||||||||||||||| ||| ||||||||||||||| |||||||    
T  33279080 ggcaagctacta----aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcaga 33278986  T
Q  202 agtgagaaatt 212  Q
    ||| |||||||    
T  33278985 agttagaaatt 33278975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 28873002 - 28873091
Alignment:
Q  1 tgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctg 90  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||| || ||||||| ||||   |||||||||||||||| ||||    
T  28873002 tgatggactgtaagaaagcccttgccgaaacagaaggtgatcttgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 33407049 - 33406911
Alignment:
Q  87 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 186  Q
    ||||||||||||||| | ||||||||||  || |||| || |||||||||| | |  | ||| |  |||| ||||| |||||| |||||||  |||||||    
T  33407049 gctgataagaaatccagaagactagcagccgatggaaaaaccggtacatat-attgacaatttatgcattagtgttataattgtagtgaactatgaaacc 33406951  T
Q  187 gactttgttggcagaagtgagaaatttaaggagttggttg 226  Q
    ||||||||||||||||||||| ||||  ||||||||||||    
T  33406950 gactttgttggcagaagtgagcaattcgaggagttggttg 33406911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 213
Target Start/End: Complemental strand, 33280482 - 33280357
Alignment:
Q  87 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 186  Q
    ||||| ||||||||||| ||| ||  ||  |||||| ||||| |||| || || || |||||||| ||||||| ||||| ||||||| ||| |||| ||     
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtaccta-cattcacgattcacgcattggttttctatttgaagttaactgtgatact 33280384  T
Q  187 gactttgttggcagaagtgagaaattt 213  Q
    |||||| ||||||||||||||||||||    
T  33280383 gacttttttggcagaagtgagaaattt 33280357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 17447719 - 17447961
Alignment:
Q  3 atggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaaggg-tctctcatccgctgataagaaatcc 101  Q
    ||||||||||||||||| | ||||||||| |||||||||||||||||| |||||||||| ||||  |||||||| |||||||||||||||||||||||||    
T  17447719 atggactgtaagaaagcccttgccgaaactgaaggtgatcttgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatccgctgataagaaatcc 17447818  T
Q  102 gggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcaga 201  Q
    || ||||| ||||  |||||||||||||||||||| || || |||| ||| ||| |||| |||||||||| |||||  ||||||||||||||||||||||    
T  17447819 ggaagactggcagctgaaggaagaatcggtacata-cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcaga 17447917  T
Q  202 agtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 245  Q
    || |||| ||| |||||||||||||| |||||||||||||||||    
T  17447918 agggagagattcaaggagttggttgatgatcttgcaatgcaagt 17447961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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