View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6702_low_9 (Length: 270)

Name: NF6702_low_9
Description: NF6702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6702_low_9
NF6702_low_9
[»] chr8 (13 HSPs)
chr8 (21-267)||(10279504-10279750)
chr8 (138-260)||(17888052-17888174)
chr8 (138-267)||(8358752-8358881)
chr8 (94-163)||(35225944-35226013)
chr8 (92-163)||(12157181-12157256)
chr8 (92-163)||(19262657-19262732)
chr8 (125-214)||(41527035-41527124)
chr8 (122-214)||(15342303-15342395)
chr8 (122-214)||(15431368-15431460)
chr8 (122-214)||(15522672-15522764)
chr8 (181-219)||(18430871-18430909)
chr8 (136-206)||(38290544-38290614)
chr8 (140-214)||(43215553-43215627)
[»] chr4 (12 HSPs)
chr4 (114-260)||(13918224-13918370)
chr4 (125-214)||(6554533-6554622)
chr4 (124-252)||(37530085-37530212)
chr4 (138-206)||(316508-316576)
chr4 (138-269)||(6559827-6559958)
chr4 (172-231)||(48683524-48683583)
chr4 (136-213)||(285103-285180)
chr4 (147-267)||(55051911-55052032)
chr4 (103-163)||(4236391-4236451)
chr4 (103-163)||(4279722-4279782)
chr4 (138-214)||(42727175-42727251)
chr4 (149-214)||(52542093-52542160)
[»] chr6 (9 HSPs)
chr6 (108-255)||(15878817-15878964)
chr6 (122-212)||(9449611-9449701)
chr6 (136-214)||(4852811-4852889)
chr6 (136-214)||(11554389-11554467)
chr6 (115-163)||(10191104-10191152)
chr6 (140-214)||(1599848-1599922)
chr6 (136-214)||(24397919-24397996)
chr6 (138-267)||(18089938-18090067)
chr6 (123-163)||(2953185-2953225)
[»] chr5 (5 HSPs)
chr5 (121-213)||(3008216-3008310)
chr5 (123-219)||(3009391-3009489)
chr5 (122-211)||(11769770-11769859)
chr5 (127-214)||(9024946-9025033)
chr5 (147-267)||(4064019-4064140)
[»] chr3 (7 HSPs)
chr3 (138-267)||(20779566-20779695)
chr3 (122-214)||(10020102-10020194)
chr3 (115-187)||(40416275-40416347)
chr3 (111-174)||(10021092-10021155)
chr3 (109-174)||(32971201-32971266)
chr3 (112-163)||(51083-51134)
chr3 (111-174)||(10021811-10021874)
[»] chr7 (5 HSPs)
chr7 (117-267)||(18290421-18290571)
chr7 (94-163)||(36837376-36837445)
chr7 (128-269)||(6678296-6678437)
chr7 (136-214)||(42078961-42079041)
chr7 (123-163)||(43989679-43989719)
[»] chr1 (5 HSPs)
chr1 (124-252)||(28963486-28963613)
chr1 (128-163)||(3982724-3982759)
chr1 (133-163)||(47783153-47783183)
chr1 (138-206)||(31089550-31089618)
chr1 (97-205)||(49882679-49882787)
[»] scaffold2049 (1 HSPs)
scaffold2049 (124-255)||(212-342)
[»] scaffold0012 (1 HSPs)
scaffold0012 (124-255)||(94714-94844)
[»] chr2 (9 HSPs)
chr2 (138-265)||(20106611-20106738)
chr2 (138-206)||(31963709-31963777)
chr2 (140-214)||(5788097-5788171)
chr2 (134-206)||(14905101-14905171)
chr2 (125-214)||(31965846-31965935)
chr2 (123-163)||(17680963-17681003)
chr2 (140-214)||(41754007-41754081)
chr2 (140-214)||(45661109-45661183)
chr2 (136-172)||(36720076-36720112)
[»] scaffold0114 (2 HSPs)
scaffold0114 (125-214)||(37032-37121)
scaffold0114 (113-214)||(1350-1449)
[»] scaffold0284 (1 HSPs)
scaffold0284 (138-269)||(7537-7668)
[»] scaffold0051 (1 HSPs)
scaffold0051 (95-162)||(18270-18337)
[»] scaffold0159 (1 HSPs)
scaffold0159 (140-214)||(32470-32544)
[»] scaffold0107 (1 HSPs)
scaffold0107 (127-173)||(43666-43712)
[»] scaffold0380 (1 HSPs)
scaffold0380 (140-211)||(15272-15343)
[»] scaffold0211 (1 HSPs)
scaffold0211 (125-214)||(18458-18547)
[»] scaffold1345 (1 HSPs)
scaffold1345 (123-163)||(1845-1885)
[»] scaffold0216 (1 HSPs)
scaffold0216 (138-214)||(29169-29245)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 267
Target Start/End: Original strand, 10279504 - 10279750
Alignment:
Q  21 tacactctaatagacaaaacacacactacannnnnnnnnccttatcgtctctctcatgttcaaattccttatcgtcacatacttacagacgtggatagtc 120  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  10279504 tacactctaatagacaaaacacacactacatttttttttccttatcgtctctctcatgtttaaattccttatcgtcacataattacagacgtggatagtc 10279603  T
Q  121 acacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaa 220  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10279604 gcacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaa 10279703  T
Q  221 atgtctaatgccttcaggttttttgtaaagatgtgatgtccatctca 267  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  10279704 atgtctaatgccttcaggttttttgtaaagatgtgatgtcaatctca 10279750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 138 - 260
Target Start/End: Original strand, 17888052 - 17888174
Alignment:
Q  138 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcag 237  Q
    ||||||||||||||| ||||||||||| || |||| |  ||| ||||||||||||| |||||||||||| |||||||  | ||||   ||||| ||| ||    
T  17888052 atgttaatgtgtcaaatgtgagttaacattatacactggatggaagagtagattttgaacaacatataagtgagatgaccgaaatacataatgtcttaag 17888151  T
Q  238 gttttttgtaaagatgtgatgtc 260  Q
    ||||| |||||||||||| ||||    
T  17888152 gttttatgtaaagatgtggtgtc 17888174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 8358881 - 8358752
Alignment:
Q  138 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcag 237  Q
    ||||||||||||||| ||||||||||| || |||| |  ||| ||||||||||||| |||||||||||| |||||||  | ||||   ||||| ||| ||    
T  8358881 atgttaatgtgtcaaatgtgagttaacgttatacactcgatggaagagtagattttgaacaacatataagtgagatgaccgaaatacataatgtcttaag 8358782  T
Q  238 gttttttgtaaagatgtgatgtccatctca 267  Q
    ||||| |||||| ||||| |||| ||||||    
T  8358781 gttttatgtaaatatgtggtgtcaatctca 8358752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 35226013 - 35225944
Alignment:
Q  94 gtcacatacttacagacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 163  Q
    |||||||| ||||| || |||| |||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  35226013 gtcacataattacaaacttggagagtcacacacttgaataaaagatgttaatgtgtcaagtatgagttaa 35225944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 12157181 - 12157256
Alignment:
Q  92 tcgtcacatacttacagacgtggat----agtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 163  Q
    |||||||||| |||||||| |||||    ||||| |||||||||||| |||| |||||||||||| ||||||||||    
T  12157181 tcgtcacataattacagacatggatggagagtcatacacttgattaaaagatattaatgtgtcaattgtgagttaa 12157256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 19262732 - 19262657
Alignment:
Q  92 tcgtcacatacttacagacgtggat----agtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 163  Q
    |||||||||| |||||||| |||||    |||| ||||||||||||| |||||||||| |||||||||||| ||||    
T  19262732 tcgtcacataattacagacatggatggagagtcgcacacttgattaaaagatgttaatctgtcaagtgtgacttaa 19262657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 41527124 - 41527035
Alignment:
Q  125 acttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||||| ||| |||| |||||||||||||||||||||||  ||||| | |  ||  ||||||||||||| || ||||||||| |||||||    
T  41527124 acttgaataagagatattaatgtgtcaagtgtgagttaaaattctatagtggatagaagagtagattttgaataacatataagtgagatg 41527035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 15342395 - 15342303
Alignment:
Q  122 cacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    ||||||||||||| |||| ||||||| | |||||||||||||  || || |||  ||| |||| || ||||| |||||||||||| |||||||    
T  15342395 cacacttgattaagagatattaatgtattaagtgtgagttaaagttatatattggatggaagattacattttgaacaacatataagtgagatg 15342303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 15431460 - 15431368
Alignment:
Q  122 cacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    ||||||||||||| |||| ||||||| | |||||||||||||  || || |||  ||| |||| || ||||| |||||||||||| |||||||    
T  15431460 cacacttgattaagagatattaatgtattaagtgtgagttaaagttatatattggatggaagattacattttgaacaacatataagtgagatg 15431368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 15522764 - 15522672
Alignment:
Q  122 cacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    ||||||||||||| |||| ||||||| | |||||||||||||  || || |||  ||| |||| || ||||| |||||||||||| |||||||    
T  15522764 cacacttgattaagagatattaatgtattaagtgtgagttaaagttatatattggatggaagattacattttgaacaacatataagtgagatg 15522672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 18430909 - 18430871
Alignment:
Q  181 aagagtagattttcaacaacatataaatgagatggtcca 219  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  18430909 aagagtaaattttcaacaacatataaatgagatgctcca 18430871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 38290544 - 38290614
Alignment:
Q  136 agatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataa 206  Q
    |||||||||||||||||||||||||||   || ||||||||||| ||||| | || || || |||||||||    
T  38290544 agatgttaatgtgtcaagtgtgagttataattttacattacatgcaagagaaaatgtttaaaaacatataa 38290614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 43215627 - 43215553
Alignment:
Q  140 gttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    ||||||||| || ||||||||||||||| ||||||  ||| ||||||| || || | |||||||||| |||||||    
T  43215627 gttaatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatg 43215553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 260
Target Start/End: Original strand, 13918224 - 13918370
Alignment:
Q  114 gatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagat 213  Q
    |||||||||||| || ||||  | ||||||||||||||| ||||||||||| || ||||||  ||| |||||||||||||||||||||||||| ||||||    
T  13918224 gatagtcacacaattcattaggatatgttaatgtgtcaaatgtgagttaacgttatacattggatggaagagtagattttcaacaacatataattgagat 13918323  T
Q  214 ggtccaaatgtctaatgccttcaggttttttgtaaagatgtgatgtc 260  Q
    |  | ||||   ||||| ||| ||||||| |||||||||||| ||||    
T  13918324 gaccgaaatacataatgtcttaaggttttatgtaaagatgtggtgtc 13918370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 6554533 - 6554622
Alignment:
Q  125 acttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||||| ||| ||||||||||||||||||||||||||||  ||||| | |  ||| ||||||||||||| || ||||||||| |||||||    
T  6554533 acttgaataagagatgttaatgtgtcaagtgtgagttaaaattctatagtggatggaagagtagattttgaataacatataagtgagatg 6554622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 37530212 - 37530085
Alignment:
Q  124 cacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatg 223  Q
    ||||| ||||| |||||||||||||||||||| ||||| || ||||||||   ||| ||||| | |||||||||| ||||| ||||||||| ||||  |     
T  37530212 cacttcattaagagatgttaatgtgtcaagtgcgagttgacattctacatcggatggaagagaaaattttcaacagcatat-aatgagatgttccatgta 37530114  T
Q  224 tctaatgccttcaggttttttgtaaagat 252  Q
    || |||||||| ||||||| ||| |||||    
T  37530113 tccaatgccttaaggttttgtgttaagat 37530085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 316508 - 316576
Alignment:
Q  138 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataa 206  Q
    ||||||||||||||| || |||||||  || ||||||| ||||||||||||||||| | ||||||||||    
T  316508 atgttaatgtgtcaaatgcgagttaaaattatacattagatgaaagagtagattttgagcaacatataa 316576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 269
Target Start/End: Original strand, 6559827 - 6559958
Alignment:
Q  138 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcag 237  Q
    ||||||||||||||| || |||||||| || || |||| ||| ||||||||||||| | |||||||||| | |||||  | |||| ||||||  ||| ||    
T  6559827 atgttaatgtgtcaaatgcgagttaacgttatagattagatggaagagtagattttgagcaacatataagtcagatgaccaaaatatctaatatcttaag 6559926  T
Q  238 gttttttgtaaagatgtgatgtccatctcatt 269  Q
    ||||  ||| ||| |||| |||| ||||||||    
T  6559927 gtttcatgtgaagctgtggtgtcaatctcatt 6559958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 48683524 - 48683583
Alignment:
Q  172 attacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgc 231  Q
    |||| ||||||||||| ||||| ||||||||||| |||||||| |||| || ||||||||    
T  48683524 attaaatgaaagagtatattttgaacaacatatagatgagatgatccatatatctaatgc 48683583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 285103 - 285180
Alignment:
Q  136 agatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagat 213  Q
    ||||||||||| |||| ||| ||||||| ||||||  ||  ||| ||||||||||||| |||||||| ||| ||||||    
T  285103 agatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgtaagtgagat 285180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 267
Target Start/End: Original strand, 55051911 - 55052032
Alignment:
Q  147 tgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaa-catataaatgagatggtccaaatgtctaatgccttcaggttttttg 245  Q
    |||||||||||||||| |  ||||||||  ||| | ||||| ||||| || || ||||||| |||||||   || |||||||||||||| ||||||| |     
T  55051911 tgtcaagtgtgagttagcactctacattggatggatgagtatattttgaaaaaacatataagtgagatgactcatatgtctaatgccttaaggttttatc 55052010  T
Q  246 taaagatgtgatgtccatctca 267  Q
    |||||||| | |||| ||||||    
T  55052011 taaagatgcggtgtcaatctca 55052032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 4236451 - 4236391
Alignment:
Q  103 ttacagacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 163  Q
    ||||||||||||| ||| ||||| |||||||| | ||||| |||| |||||||||| ||||    
T  4236451 ttacagacgtggagagttacacaattgattaacaaatgttgatgtatcaagtgtgaattaa 4236391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 4279782 - 4279722
Alignment:
Q  103 ttacagacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 163  Q
    ||||||||||||| ||| ||||| |||||||| | ||||| |||| |||||||||| ||||    
T  4279782 ttacagacgtggagagttacacaattgattaacaaatgttgatgtatcaagtgtgaattaa 4279722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 42727251 - 42727175
Alignment:
Q  138 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    ||||||||||||||| | ||||||||  ||||||| || ||||| |||||||| || || ||||||||  |||||||    
T  42727251 atgttaatgtgtcaaatatgagttaaagttctacaatagatgaatgagtagatattgaataacatatatgtgagatg 42727175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 52542160 - 52542093
Alignment:
Q  149 tcaagtgtgagttaaccttctacat--tacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||||||||||||||| ||||||||  |  ||||||||||||||||| | ||| ||| ||||||||||    
T  52542160 tcaagtgtgagttaacattctacatattggatgaaagagtagattttgatcaagatagaaatgagatg 52542093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 108 - 255
Target Start/End: Original strand, 15878817 - 15878964
Alignment:
Q  108 gacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaa 207  Q
    ||||| |||||||||||| || ||||  | ||||||||||||||| ||||||||||| || ||||||  ||| ||||||||||||| ||||||||||||     
T  15878817 gacgtagatagtcacacaattcattaggatatgttaatgtgtcaaatgtgagttaacgttatacattggatggaagagtagattttgaacaacatataat 15878916  T
Q  208 tgagatggtccaaatgtctaatgccttcaggttttttgtaaagatgtg 255  Q
    |||||||  | |||    ||||| ||| ||||||| ||||||||||||    
T  15878917 tgagatgaccgaaacacataatgtcttaaggttttctgtaaagatgtg 15878964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 9449701 - 9449611
Alignment:
Q  122 cacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgaga 212  Q
    ||||||||||||| ||||||||| ||||||||||||||||| | |||||||||  ||| | ||||| ||||| || ||||||||| |||||    
T  9449701 cacacttgattaagagatgttaacgtgtcaagtgtgagttaccattctacattggatggatgagtatattttgaaaaacatataagtgaga 9449611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 4852811 - 4852889
Alignment:
Q  136 agatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||||||||||||||| ||||||||||||||||||||||  ||| | |||||| | || |||||||||| | |||||||    
T  4852811 agatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacatattagtgagatg 4852889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 11554467 - 11554389
Alignment:
Q  136 agatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||||||||||||||| ||||||||||||||||||||||  ||| | |||||| | || |||||||||| | |||||||    
T  11554467 agatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacatattagtgagatg 11554389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 10191104 - 10191152
Alignment:
Q  115 atagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 163  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||||||    
T  10191104 atagtcgcacacttgattaaaagatgttaatgtatcaagtgtgagttaa 10191152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 1599848 - 1599922
Alignment:
Q  140 gttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||||||||||| |||| | |||| ||| ||||||| ||| |||||||||| || | ||||||||||||||||||    
T  1599848 gttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataaatgagatg 1599922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 24397919 - 24397996
Alignment:
Q  136 agatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||| ||||||||||| ||||||||||| ||||||||||| | |||  |||| || || | ||||||||||||||||||    
T  24397919 agatattaatgtgtcatgtgtgagttaa-cttctacattagacgaattagtatatattgagcaacatataaatgagatg 24397996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 18090067 - 18089938
Alignment:
Q  138 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcag 237  Q
    |||||||| |||||| ||| | ||||  ||||| ||| | ||||||||||||| ||||  ||||||||| |||||||  | | ||  |||||||||| ||    
T  18090067 atgttaatatgtcaattgtcacttaaagttctatattccttgaaagagtagatgttcagaaacatataattgagatgaacaatatacctaatgccttaag 18089968  T
Q  238 gttttttgtaaagatgtgatgtccatctca 267  Q
    |||||  || |||||||| |||| ||||||    
T  18089967 gttttgggtgaagatgtggtgtcaatctca 18089938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 2953185 - 2953225
Alignment:
Q  123 acacttgattaatagatgttaatgtgtcaagtgtgagttaa 163  Q
    |||||||||| |||||||||  |||||||||||||||||||    
T  2953185 acacttgattgatagatgttgttgtgtcaagtgtgagttaa 2953225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 3008310 - 3008216
Alignment:
Q  121 acacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctac--attacatgaaagagtagattttcaacaacatataaatgagat 213  Q
    |||| ||||||||| | ||||||| ||||||||||||||||||| ||||||  |||  ||||||||||||||||| | |||||||||||||||||    
T  3008310 acacgcttgattaaaatatgttaacgtgtcaagtgtgagttaacgttctacgtatttgatgaaagagtagattttgatcaacatataaatgagat 3008216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 3009489 - 3009391
Alignment:
Q  123 acacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctac--attacatgaaagagtagattttcaacaacatataaatgagatggtcca 219  Q
    |||||||||||| | ||  ||||||||||||||||||||||| ||||||  |||  |||||| |||||||||| | |||||||||||||| ||| ||||    
T  3009489 acacttgattaaaatataataatgtgtcaagtgtgagttaacgttctacatattggatgaaaaagtagattttgatcaacatataaatgaaatgatcca 3009391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 11769859 - 11769770
Alignment:
Q  122 cacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgag 211  Q
    ||||||||||||| ||||||||||||||||||| | ||||||  ||| | |||  ||| ||||||||||||| | ||||| |||| ||||    
T  11769859 cacacttgattaagagatgttaatgtgtcaagtattagttaaagttcaaaattggatggaagagtagattttgatcaacacataactgag 11769770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 9024946 - 9025033
Alignment:
Q  127 ttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||| ||| ||||||||||||||||||||||||||||  || || | |  ||  ||||||||||||| || ||||||||| |||||||    
T  9024946 ttgaataagagatgttaatgtgtcaagtgtgagttaaaattatatagtggatagaagagtagattttgaataacatataagtgagatg 9025033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 267
Target Start/End: Original strand, 4064019 - 4064140
Alignment:
Q  147 tgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaa-catataaatgagatggtccaaatgtctaatgccttcaggttttttg 245  Q
    |||||||||||||||| |  ||||||||  ||| | ||||| ||||| || || ||||||| |||||||   || |||||||||||||| ||||||| |     
T  4064019 tgtcaagtgtgagttaccactctacattggatggatgagtatattttgaaaaaacatataagtgagatgactcatatgtctaatgccttaaggttttatc 4064118  T
Q  246 taaagatgtgatgtccatctca 267  Q
    |||||||| | |||| ||||||    
T  4064119 taaagatgcggtgtcaatctca 4064140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 20779566 - 20779695
Alignment:
Q  138 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcag 237  Q
    ||||||||||||||| ||||||||||| || |||| |  ||| ||||||||||||| |||||||||||| |||||||  | ||||   ||||| ||| ||    
T  20779566 atgttaatgtgtcaaatgtgagttaacattatacactggatggaagagtagattttgaacaacatataagtgagatgaccgaaatacataatgtcttgag 20779665  T
Q  238 gttttttgtaaagatgtgatgtccatctca 267  Q
    ||||| |||||| ||||| |||| ||||||    
T  20779666 gttttatgtaaatatgtggtgtcaatctca 20779695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 10020102 - 10020194
Alignment:
Q  122 cacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    ||||||||||||||||||||||| || |||||||||| |||   ||||| |||  ||| ||| ||||||||| |||||||||||| |||||||    
T  10020102 cacacttgattaatagatgttaacgtatcaagtgtgatttagagttctatattgaatggaagggtagattttgaacaacatataagtgagatg 10020194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 40416275 - 40416347
Alignment:
Q  115 atagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagta 187  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||| || |||||||||  |||||| ||||    
T  40416275 atagtcacacacttgattaagagatgttaatgtgttaagtatgagttgacgttctacattggatgaaatagta 40416347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 10021092 - 10021155
Alignment:
Q  111 gtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacatt 174  Q
    |||||||||| |||||||||| || ||||||||||| |||||||||||||| || |||||||||    
T  10021092 gtggatagtcgcacacttgataaagagatgttaatgagtcaagtgtgagtttacgttctacatt 10021155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 32971266 - 32971201
Alignment:
Q  109 acgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacatt 174  Q
    |||||||||||| |||||||||| ||  |||||||||| |||||||||||||| || |||||||||    
T  32971266 acgtggatagtcgcacacttgataaagcgatgttaatgagtcaagtgtgagtttacgttctacatt 32971201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 51083 - 51134
Alignment:
Q  112 tggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 163  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||| ||||    
T  51083 tggagagtcacacacttgattaaaagatgttaatctgtcaagtgtgacttaa 51134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 10021811 - 10021874
Alignment:
Q  111 gtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacatt 174  Q
    ||||||||||  ||||||||| || ||||||||||| |||||||||||||| || |||||||||    
T  10021811 gtggatagtcgaacacttgataaagagatgttaatgagtcaagtgtgagtttacgttctacatt 10021874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 267
Target Start/End: Complemental strand, 18290571 - 18290421
Alignment:
Q  117 agtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggt 216  Q
    ||||||||| |||||||  | ||||| ||||| ||| |||||||||||  | |||| |  ||| ||||||||||||| |||||||||||| |||||||      
T  18290571 agtcacacaattgattaggatatgttgatgtgacaaatgtgagttaacggtatacactggatggaagagtagattttaaacaacatataagtgagatgac 18290472  T
Q  217 ccaaatgtctaatgccttcaggttttttgtaaagatgtgatgtccatctca 267  Q
    | ||||   ||||| ||| ||||||| |||||||||||| |||| ||||||    
T  18290471 cgaaatacataatgtcttaaggttttatgtaaagatgtggtgtcaatctca 18290421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 36837445 - 36837376
Alignment:
Q  94 gtcacatacttacagacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 163  Q
    |||||||| |||||||||| || | ||| |||||||||||| |||||||||||||| |||||| ||||||    
T  36837445 gtcacataattacagacgtagagaatcaaacacttgattaagagatgttaatgtgttaagtgttagttaa 36837376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 269
Target Start/End: Complemental strand, 6678437 - 6678296
Alignment:
Q  128 tgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtcta 227  Q
    ||||||| |||||||  |||||||| | ||||||||  || | ||||  ||| || | |||||||| |||||||||||||||| |||||||| ||  | |    
T  6678437 tgattaacagatgttggtgtgtcaattatgagttaatgttttgcattggatggaaaaatagatttttaacaacatataaatgacatggtccatatagcaa 6678338  T
Q  228 atgccttcaggttttttgtaaagatgtgatgtccatctcatt 269  Q
    |||| || ||||||| ||| ||||||| ||||  ||||||||    
T  6678337 atgcattaaggttttgtgtgaagatgtaatgtaaatctcatt 6678296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 42079041 - 42078961
Alignment:
Q  136 agatgttaatgtgtcaagtgtgagttaaccttc--tacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||||||||||||||| ||||||||||| ||||  ||||||  ||| |||||||||| || | |||||| ||| |||||||    
T  42079041 agatgttaatgtgtcatgtgtgagttaaacttctatacatttgatgcaagagtagatattgagcaacatgtaagtgagatg 42078961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 43989679 - 43989719
Alignment:
Q  123 acacttgattaatagatgttaatgtgtcaagtgtgagttaa 163  Q
    |||||| ||| | ||||||||||||||||||||||||||||    
T  43989679 acacttaattgagagatgttaatgtgtcaagtgtgagttaa 43989719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 252
Target Start/End: Original strand, 28963486 - 28963613
Alignment:
Q  124 cacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatg 223  Q
    ||||| ||||| |||||||||||||||||||| ||||| || ||||||||   ||| ||||| | |||||||||| ||||| ||||||||| ||||  |     
T  28963486 cacttcattaagagatgttaatgtgtcaagtgcgagttgacattctacatcggatggaagagaaaattttcaacagcatat-aatgagatgttccatgta 28963584  T
Q  224 tctaatgccttcaggttttttgtaaagat 252  Q
    || |||||||| ||||||| ||| |||||    
T  28963585 tccaatgccttaaggttttgtgttaagat 28963613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 3982724 - 3982759
Alignment:
Q  128 tgattaatagatgttaatgtgtcaagtgtgagttaa 163  Q
    ||||||| ||||||||||||||||||||||||||||    
T  3982724 tgattaagagatgttaatgtgtcaagtgtgagttaa 3982759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 163
Target Start/End: Original strand, 47783153 - 47783183
Alignment:
Q  133 aatagatgttaatgtgtcaagtgtgagttaa 163  Q
    |||||||||||||||||||||||||||||||    
T  47783153 aatagatgttaatgtgtcaagtgtgagttaa 47783183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 31089618 - 31089550
Alignment:
Q  138 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataa 206  Q
    ||||||||||||||  ||| ||||||  |||||||||  ||||||||||| ||||| | ||||||||||    
T  31089618 atgttaatgtgtcatatgtaagttaaatttctacattggatgaaagagtatattttgagcaacatataa 31089550  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 49882679 - 49882787
Alignment:
Q  97 acatacttacagacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaa 196  Q
    ||||| |||| ||||| ||||| |||||| |||||||  | ||||||||||||||| |  |||||||| || |||| |  ||| || |||||||||| |     
T  49882679 acataattacggacgtagatagacacacaattgattaggatatgttaatgtgtcaaatacgagttaacgttatacaatggatggaatagtagattttgag 49882778  T
Q  197 caacatata 205  Q
    |||||||||    
T  49882779 caacatata 49882787  T

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Target: scaffold2049 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold2049
Description:

Target: scaffold2049; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 255
Target Start/End: Complemental strand, 342 - 212
Alignment:
Q  124 cacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatg 223  Q
    ||||| ||||| ||||||||||||| |||||||||||| || ||||||||   ||| ||||| | |||||||||||||||| ||||||||| || |  |     
T  342 cacttcattaagagatgttaatgtgccaagtgtgagttgacattctacatcggatggaagagaaaattttcaacaacatat-aatgagatgttcgatgta 244  T
Q  224 tctaatgccttcaggttttttgtaaagatgtg 255  Q
    || |||||||| ||||||| ||| || |||||    
T  243 tccaatgccttaaggttttgtgttaaaatgtg 212  T

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Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 255
Target Start/End: Complemental strand, 94844 - 94714
Alignment:
Q  124 cacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatg 223  Q
    ||||| ||||| ||||||||||||| |||||||||||| || ||||||||   ||| ||||| | |||||||||||||||| ||||||||| || |  |     
T  94844 cacttcattaagagatgttaatgtgccaagtgtgagttgacattctacatcggatggaagagaaaattttcaacaacatat-aatgagatgttcgatgta 94746  T
Q  224 tctaatgccttcaggttttttgtaaagatgtg 255  Q
    || |||||||| ||||||| ||| || |||||    
T  94745 tccaatgccttaaggttttgtgttaaaatgtg 94714  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 265
Target Start/End: Complemental strand, 20106738 - 20106611
Alignment:
Q  138 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcag 237  Q
    ||||||||||||||| ||||||||||| || ||||||  ||| ||||||||||||| || || |||||| |||||||  | ||||   ||||| ||| ||    
T  20106738 atgttaatgtgtcaaatgtgagttaacgttatacattggatggaagagtagattttgaataaaatataagtgagatgaccaaaatacataatgtcttaag 20106639  T
Q  238 gttttttgtaaagatgtgatgtccatct 265  Q
    ||||| |||||| ||||| |||| ||||    
T  20106638 gttttatgtaaatatgtggtgtcaatct 20106611  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 31963777 - 31963709
Alignment:
Q  138 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataa 206  Q
    ||||||||||||||| || |||||||| || ||||||| ||| ||||||||||||| | ||||||||||    
T  31963777 atgttaatgtgtcaaatgcgagttaactttatacattagatggaagagtagattttgagcaacatataa 31963709  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 5788171 - 5788097
Alignment:
Q  140 gttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||||||||||| |||||| |||| ||||||||||| ||| ||||||| || || | |||||||||| |||||||    
T  5788171 gttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatg 5788097  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 14905101 - 14905171
Alignment:
Q  134 atagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataa 206  Q
    ||||||||| ||||||||||||||||||||  || || |||  ||||||||||||||||  ||||||||||||    
T  14905101 atagatgttgatgtgtcaagtgtgagttaaagttttatattggatgaaagagtagattt--aacaacatataa 14905171  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 31965935 - 31965846
Alignment:
Q  125 acttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||||| ||| ||| ||||||||||||||| ||||||||  ||||| | || ||  ||||||||||||| || ||||||||| |||||||    
T  31965935 acttgaataagagaagttaatgtgtcaagtatgagttaaaattctatagtagatagaagagtagattttgaataacatataagtgagatg 31965846  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 17681003 - 17680963
Alignment:
Q  123 acacttgattaatagatgttaatgtgtcaagtgtgagttaa 163  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  17681003 acacttgattaaaagatgttaatgtatcaagtgtgagttaa 17680963  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 41754081 - 41754007
Alignment:
Q  140 gttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||||||||||| |||| | |||| ||| ||||||| ||| |||||||||| || | |||||||||| |||||||    
T  41754081 gttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataagtgagatg 41754007  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 45661109 - 45661183
Alignment:
Q  140 gttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    ||||||||| || ||||||||||||||| ||||||  ||| ||||||| || || | |||||||||| |||||||    
T  45661109 gttaatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatg 45661183  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 36720076 - 36720112
Alignment:
Q  136 agatgttaatgtgtcaagtgtgagttaaccttctaca 172  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36720076 agatgttaatgtgtcaagtgtgagttaaaattctaca 36720112  T

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Target: scaffold0114 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 37032 - 37121
Alignment:
Q  125 acttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||||| ||| ||||||||||||||||||||||||||||  ||||| | |  ||  ||||||||||||| || ||||||||| |||||||    
T  37032 acttgaataagagatgttaatgtgtcaagtgtgagttaaaattctatagtggatagaagagtagattttgaataacatataagtgagatg 37121  T

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Target: scaffold0114; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 1350 - 1449
Alignment:
Q  113 ggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgaga 212  Q
    ||||| ||||||| |||||||| ||||  ||||||||||||||||||| ||  ||| |||||  ||| |||| |||||||| || || |||||| |||||    
T  1350 ggataatcacacatttgattaagagat--taatgtgtcaagtgtgagtgaatgttcaacattgaatggaagaatagattttgaataatatataagtgaga 1447  T

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Target: scaffold0284 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 269
Target Start/End: Complemental strand, 7668 - 7537
Alignment:
Q  138 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcag 237  Q
    ||||||||||||||| || |||||||| || ||||||  ||| ||||||||||||| | |||||||||| | |||||  | ||||  |||||| ||| ||    
T  7668 atgttaatgtgtcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatataagttagatgaccaaaatacctaatgtcttaag 7569  T
Q  238 gttttttgtaaagatgtgatgtccatctcatt 269  Q
    ||||  ||| ||| |||| |||| ||||||||    
T  7568 gtttcatgtgaagttgtggtgtcaatctcatt 7537  T

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Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 18270 - 18337
Alignment:
Q  95 tcacatacttacagacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagtta 162  Q
    ||||||| ||||| | |||||||||  ||||||||||||| | ||||||||||||||||||| |||||    
T  18270 tcacataattacaaatgtggatagtagcacacttgattaagatatgttaatgtgtcaagtgttagtta 18337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 32544 - 32470
Alignment:
Q  140 gttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||||||||||| |||||| |||| ||||||||||| ||| ||||||| || || | |||||||||| |||||||    
T  32544 gttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatg 32470  T

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Target: scaffold0107 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 43666 - 43712
Alignment:
Q  127 ttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacat 173  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||||    
T  43666 ttgattaaaatatgttaatgtgtcaagtgtgagttaacgttctacat 43712  T

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Target: scaffold0380 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 15272 - 15343
Alignment:
Q  140 gttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgag 211  Q
    ||||||||||||||||||| |||| ||| ||||||| ||| | |||||||| || | |||||||||| ||||    
T  15272 gttaatgtgtcaagtgtgatttaaacttttacattatatgtatgagtagatattgagcaacatataagtgag 15343  T

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Target: scaffold0211 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 18547 - 18458
Alignment:
Q  125 acttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||||| ||| ||||||||||  ||||||||||||||||  ||||| | |  ||  ||||||||||||| || ||||||||| |||||||    
T  18547 acttgaataagagatgttaattagtcaagtgtgagttaaaattctatagtggatagaagagtagattttgaataacatataagtgagatg 18458  T

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Target: scaffold1345 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 1845 - 1885
Alignment:
Q  123 acacttgattaatagatgttaatgtgtcaagtgtgagttaa 163  Q
    |||||| ||| | ||||||||||||||||||||||||||||    
T  1845 acacttaattgagagatgttaatgtgtcaagtgtgagttaa 1885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 29245 - 29169
Alignment:
Q  138 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 214  Q
    |||||||||| |||| ||||||||||  ||| |||||  ||| || ||||||| || |||||||||||| |||||||    
T  29245 atgttaatgtatcaaatgtgagttaaagttccacattggatgcaaaagtagatgttaaacaacatataagtgagatg 29169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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