View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6704_high_1 (Length: 421)
Name: NF6704_high_1
Description: NF6704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6704_high_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 40477869 - 40478281
Alignment:
| Q |
14 |
atcaatctttatttctattggttgctatattatatattgagtattggaactgcaatgttacctattgattggtgaaactgtg--------ttattattga |
105 |
Q |
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| T |
40477869 |
atcaatctttatttctattggtt---atattatatattgagtattggaactgcaatgttacctattgattggtgaaactgtgttattgtgttattattga |
40477965 |
T |
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| Q |
106 |
tatctcactgttttttcatttcctatatgaaaaacaggttgcaaaagaatcttctggcaatcaacaaagagcagttggtgaaagtaatgttcaaattaat |
205 |
Q |
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| T |
40477966 |
tatctcactgttttttcatttcctatatgaaaaacaggttgcaaaagaatcttctggcaatcaacaaagagcagttggtgaaagtaatgttcaagttaat |
40478065 |
T |
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| Q |
206 |
tgttctgactcggatcaaggtggattgaccgaacttgagaaactattgaagcagaagattttcaccaggtatgttttgtatcctgtggatgaggaataaa |
305 |
Q |
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| T |
40478066 |
tgttctgactcggatcaaggtggattgaccgaacttgagaaactattgaagcagaagattttcaccaggtatgttttgtatcctgtggatgaggaataaa |
40478165 |
T |
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| Q |
306 |
cataattctcttgagcatttgataattttattttcaggaaagacttgtaacttctaattcaaataatgaaaatgaatatgcatataaattcaaacatttt |
405 |
Q |
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| T |
40478166 |
cataattctcttgagcatttgataattttattttcaggaaagacttgtaacttctaattcaaataatgaaaatgaatatgcatataaattcaaacatttt |
40478265 |
T |
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| Q |
406 |
aatgatgttttatagt |
421 |
Q |
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| T |
40478266 |
aatgatgttttatagt |
40478281 |
T |
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